D. rerio Gene: vps36 - ENSDARG00000057021 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057021
Namevps36
Descriptionvacuolar protein sorting 36 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-7753]
OrganismDanio rerio (zebrafish)
Synonym(s)fj33d07, wu:fj33d07, zgc:55965

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.13e3
  • 3.13e3
  • 3.55e3
  • 1.05e4
  • 1.11e4
89.53
  • 89.53
  • 88.13
  • 64.94
  • 62.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.32
  • 87.32
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
85.02
  • 85.02
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.75e3
  • 4.75e3
84.11
  • 84.11
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
4.98e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.67e3
  • 8.96e3
  • 8.96e3
  • 9.25e3
  • 9.51e3
  • 9.61e3
  • 9.69e3
  • 9.82e3
  • 1.03e4
  • 1.10e4
  • 1.12e4
  • 1.13e4
  • 1.13e4
  • 1.14e4
  • 1.19e4
  • 1.25e4
  • 1.49e4
  • 1.49e4
83.33
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 70.99
  • 69.99
  • 69.99
  • 69.03
  • 68.17
  • 67.83
  • 67.56
  • 67.12
  • 65.42
  • 63.11
  • 62.65
  • 62.28
  • 62.15
  • 61.79
  • 60.21
  • 58.31
  • 50.25
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.06e3
  • 5.06e3
  • 1.50e4
83.06
  • 83.06
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
5.07e3
  • 5.07e3
  • 5.82e3
  • 6.96e3
  • 8.30e3
  • 8.67e3
83.04
  • 83.04
  • 80.51
  • 76.71
  • 72.22
  • 70.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.83e3
  • 5.83e3
80.48
  • 80.48
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
5.93e3
  • 5.93e3
  • 7.35e3
  • 8.18e3
  • 9.03e3
  • 9.33e3
  • 9.60e3
80.16
  • 80.16
  • 75.40
  • 72.61
  • 69.77
  • 68.75
  • 67.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.03e3
  • 6.03e3
  • 7.01e3
79.82
  • 79.82
  • 76.55
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
6.11e3
  • 6.11e3
  • 6.54e3
  • 6.64e3
  • 6.90e3
  • 7.26e3
  • 7.60e3
  • 8.31e3
  • 9.74e3
  • 9.98e3
  • 1.21e4
79.54
  • 79.54
  • 78.11
  • 77.78
  • 76.88
  • 75.68
  • 74.56
  • 72.18
  • 67.39
  • 66.57
  • 59.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.34
  • 79.34
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.19e3
  • 6.19e3
79.27
  • 79.27
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.32e3
  • 6.32e3
78.85
  • 78.85
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
78.24
  • 78.24
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.52e3
  • 6.52e3
78.17
  • 78.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
77.12
  • 77.12
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.10e3
  • 7.10e3
76.21
  • 76.21
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.15
  • 76.15
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.83
  • 75.83
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.37e3
  • 7.37e3
75.34
  • 75.34
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.38e3
  • 7.38e3
  • 8.86e3
75.31
  • 75.31
  • 70.35
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.85e3
  • 7.85e3
73.72
  • 73.72
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
71.91
  • 71.91
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.59e3
  • 8.59e3
  • 9.92e3
  • 1.17e4
71.24
  • 71.24
  • 66.79
  • 60.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.61e3
  • 8.61e3
  • 9.85e3
71.18
  • 71.18
  • 67.03
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.69e3
  • 9.69e3
67.56
  • 67.56
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.99e3
  • 9.99e3
66.55
  • 66.55
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.02e4
  • 1.02e4
65.75
  • 65.75
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
64.96
  • 64.96
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.08e4
  • 1.08e4
63.70
  • 63.70
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.95
  • 62.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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