D. rerio Gene: chrna2b - ENSDARG00000057025 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057025
Namechrna2b
Descriptioncholinergic receptor, nicotinic, alpha 2b (neuronal) [Source:ZFIN;Acc:ZDB-GENE-041001-99]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-142k18.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
2.55e3
  • 2.55e3
91.46
  • 91.46
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.44e3
  • 9.44e3
  • 9.67e3
  • 1.02e4
  • 1.07e4
  • 1.09e4
  • 1.12e4
  • 1.12e4
68.40
  • 68.40
  • 67.63
  • 65.89
  • 64.26
  • 63.61
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.07e4
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
65.61
  • 65.61
  • 65.61
  • 64.27
  • 63.32
  • 62.48
  • 62.48
  • 61.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.46
  • 50.46
AEIR
  • AEIR
UBERON:2000372interpeduncular nucleus medulla oblongata
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
  • 2.20e4
47.07
  • 47.07
  • 26.25
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
1.67e4
  • 1.67e4
  • 1.73e4
  • 1.75e4
  • 1.76e4
  • 1.78e4
44.25
  • 44.25
  • 42.04
  • 41.37
  • 41.09
  • 40.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.69e4
  • 1.69e4
  • 1.81e4
43.50
  • 43.50
  • 39.38
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.73
  • 31.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX510657
EnsemblENSDARG00000057025 (chrna2b)
Uniprot/SPTREMBLF1QFE7, F1QFE7_DANRE, F1R808, F1R808_DANRE
ZFINZDB-GENE-041001-99 (chrna2b)

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