D. rerio Gene: tvp23b - ENSDARG00000057060 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057060
Nametvp23b
Descriptiontrans-golgi network vesicle protein 23 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-404]
OrganismDanio rerio (zebrafish)
Synonym(s)fam18b, zgc:110017

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
2.73e3
  • 2.73e3
  • 3.70e3
  • 4.51e3
  • 4.88e3
  • 6.63e3
  • 1.21e4
  • 1.28e4
  • 1.33e4
  • 1.35e4
  • 1.56e4
90.85
  • 90.85
  • 87.61
  • 84.89
  • 83.67
  • 77.79
  • 59.40
  • 57.04
  • 55.33
  • 54.77
  • 47.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.59
  • 90.59
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.92e3
  • 2.92e3
90.21
  • 90.21
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.38e3
  • 3.38e3
  • 4.04e3
88.67
  • 88.67
  • 86.47
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.40e3
  • 3.40e3
88.62
  • 88.62
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
88.14
  • 88.14
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.61e3
  • 3.61e3
87.91
  • 87.91
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.32
  • 87.32
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.42
  • 86.42
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
86.25
  • 86.25
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.13e3
  • 4.13e3
86.19
  • 86.19
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.38e3
  • 4.38e3
  • 4.54e3
85.33
  • 85.33
  • 84.81
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.41e3
  • 4.41e3
85.24
  • 85.24
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.42e3
  • 4.42e3
  • 6.12e3
  • 7.90e3
  • 7.98e3
  • 1.04e4
  • 1.07e4
85.20
  • 85.20
  • 79.51
  • 73.55
  • 73.27
  • 65.33
  • 64.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
85.01
  • 85.01
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.60e3
  • 4.60e3
  • 8.03e3
  • 1.08e4
  • 1.11e4
84.59
  • 84.59
  • 73.12
  • 63.89
  • 62.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.71e3
  • 4.71e3
  • 1.10e4
84.22
  • 84.22
  • 63.24
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.04
  • 84.04
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.16
  • 83.16
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.21
  • 81.21
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.28e3
  • 7.28e3
  • 8.79e3
  • 1.40e4
75.63
  • 75.63
  • 70.58
  • 53.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.80e3
  • 7.80e3
73.90
  • 73.90
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
71.10
  • 71.10
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000017Gastrula:50%-epiboly
9.05e3
  • 9.05e3
  • 9.34e3
  • 9.36e3
  • 9.49e3
  • 9.53e3
  • 1.02e4
  • 1.03e4
  • 1.03e4
  • 1.04e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
  • 1.09e4
  • 1.10e4
  • 1.11e4
  • 1.14e4
69.70
  • 69.70
  • 68.72
  • 68.67
  • 68.24
  • 68.08
  • 65.86
  • 65.61
  • 65.42
  • 65.34
  • 64.88
  • 64.81
  • 64.80
  • 63.42
  • 63.16
  • 62.72
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
9.74e3
  • 9.74e3
  • 1.05e4
  • 1.09e4
  • 1.13e4
  • 1.22e4
67.38
  • 67.38
  • 64.93
  • 63.61
  • 62.08
  • 59.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.78e3
  • 9.78e3
67.24
  • 67.24
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.98e3
  • 9.98e3
66.58
  • 66.58
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.00e4
  • 1.00e4
66.47
  • 66.47
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.18e4
  • 1.20e4
64.27
  • 64.27
  • 63.32
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.21e4
61.75
  • 61.75
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.15e4
  • 1.15e4
61.33
  • 61.33
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.16e4
  • 1.16e4
61.13
  • 61.13
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.29e4
  • 1.29e4
56.92
  • 56.92
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.59e4
  • 1.59e4
  • 1.60e4
46.67
  • 46.67
  • 46.32
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLFP102121
EnsemblENSDARG00000057060 (tvp23b)
Uniprot/SPTREMBLF1QDV4, F1QDV4_DANRE
ZFINZDB-GENE-050522-404 (tvp23b)

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