D. rerio Gene: kdm5ba - ENSDARG00000057093 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057093
Namekdm5ba
Descriptionlysine (K)-specific demethylase 5Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5379]
OrganismDanio rerio (zebrafish)
Synonym(s)id:ibd5050, jarid1b, jarid1ba, wu:fd15c05

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
975
  • 975
  • 1.19e3
  • 2.44e3
  • 4.66e3
96.74
  • 96.74
  • 96.03
  • 91.82
  • 84.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
94.43
  • 94.43
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.74e3
  • 1.74e3
94.17
  • 94.17
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.85e3
  • 1.85e3
93.81
  • 93.81
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
2.07e3
  • 2.07e3
  • 3.43e3
  • 3.45e3
  • 3.49e3
  • 3.55e3
  • 3.75e3
  • 3.98e3
  • 4.10e3
  • 4.19e3
  • 4.46e3
  • 4.47e3
  • 4.49e3
  • 5.78e3
  • 6.32e3
  • 1.45e4
  • 1.47e4
  • 1.48e4
93.08
  • 93.08
  • 88.53
  • 88.45
  • 88.33
  • 88.11
  • 87.44
  • 86.69
  • 86.26
  • 85.96
  • 85.06
  • 85.03
  • 84.96
  • 80.64
  • 78.84
  • 51.56
  • 50.90
  • 50.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.96
  • 92.96
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.11e3
  • 2.11e3
92.95
  • 92.95
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
2.16e3
  • 2.16e3
  • 2.17e3
  • 2.49e3
  • 2.57e3
  • 3.00e3
  • 4.02e3
  • 4.04e3
  • 4.06e3
  • 4.34e3
  • 6.49e3
92.77
  • 92.77
  • 92.74
  • 91.66
  • 91.40
  • 89.96
  • 86.53
  • 86.49
  • 86.40
  • 85.47
  • 78.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
2.28e3
  • 2.28e3
  • 3.26e3
  • 3.49e3
  • 3.52e3
  • 3.82e3
  • 5.69e3
92.36
  • 92.36
  • 89.08
  • 88.32
  • 88.21
  • 87.21
  • 80.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.29e3
  • 2.29e3
92.32
  • 92.32
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.08
  • 92.08
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.45e3
  • 2.45e3
  • 2.65e3
91.81
  • 91.81
  • 91.12
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.55e3
  • 2.55e3
  • 3.02e3
91.46
  • 91.46
  • 89.88
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.58e3
  • 2.58e3
  • 4.77e3
91.37
  • 91.37
  • 84.05
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.82e3
  • 2.82e3
  • 3.26e3
  • 3.31e3
  • 3.62e3
  • 5.35e3
90.57
  • 90.57
  • 89.07
  • 88.93
  • 87.88
  • 82.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.82e3
  • 2.82e3
90.56
  • 90.56
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.27
  • 90.27
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
3.06e3
  • 3.06e3
  • 3.44e3
  • 3.68e3
89.77
  • 89.77
  • 88.47
  • 87.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.14e3
  • 3.14e3
89.50
  • 89.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.14e3
  • 3.14e3
89.49
  • 89.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.29e3
  • 3.29e3
89.00
  • 89.00
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.84
  • 88.84
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.35e3
  • 3.35e3
88.80
  • 88.80
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.74
  • 88.74
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
3.47e3
  • 3.47e3
  • 1.34e4
88.37
  • 88.37
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.76e3
  • 3.76e3
87.40
  • 87.40
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
87.26
  • 87.26
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.22e3
  • 4.22e3
85.86
  • 85.86
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.47e3
  • 4.47e3
85.04
  • 85.04
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.27e3
  • 6.27e3
79.01
  • 79.01
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.57e3
  • 8.57e3
71.31
  • 71.31
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCR628365
EnsemblENSDARG00000057093 (kdm5ba)
Uniprot/SPTREMBLA5WUR6, A5WUR6_DANRE, X1WCG3, X1WCG3_DANRE
ZFINZDB-GENE-030131-5379 (kdm5ba)

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