D. rerio Gene: si:dkey-222b8.4 - ENSDARG00000057227 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057227
Namesi:dkey-222b8.4
Descriptionsi:dkey-222b8.4 [Source:ZFIN;Acc:ZDB-GENE-060503-438]
OrganismDanio rerio (zebrafish)
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.66e3
  • 3.66e3
87.74
  • 87.74
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
  • 7.74e3
77.79
  • 77.79
  • 74.08
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.16e4
  • 1.16e4
61.06
  • 61.06
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.18e4
  • 1.18e4
  • 1.22e4
  • 1.66e4
  • 1.67e4
60.51
  • 60.51
  • 59.09
  • 44.32
  • 44.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.12
  • 55.12
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.40e4
  • 1.40e4
  • 1.75e4
53.16
  • 53.16
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.56e4
  • 1.56e4
47.72
  • 47.72
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.68e4
  • 1.68e4
  • 1.82e4
43.90
  • 43.90
  • 39.12
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.90
  • 42.90
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.77e4
  • 1.77e4
  • 1.85e4
  • 1.96e4
  • 2.00e4
40.57
  • 40.57
  • 38.22
  • 34.21
  • 32.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
1.78e4
  • 1.78e4
  • 1.79e4
  • 1.83e4
  • 1.83e4
40.38
  • 40.38
  • 40.18
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.13
  • 40.13
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.82e4
  • 1.82e4
  • 1.89e4
  • 1.90e4
39.06
  • 39.06
  • 36.81
  • 36.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.82
  • 23.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.55
  • 22.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000057227.

Cross-references

EnsemblENSDARG00000057227 (si:dkey-222b8.4)
ZFINZDB-GENE-060503-438 (si:dkey-222b8.4)
Uniprot/SPTREMBLF1QJ01, F1QJ01_DANRE, F1R000, F1R000_DANRE

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