D. rerio Gene: pbdc1 - ENSDARG00000057299 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057299
Namepbdc1
Descriptionpolysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459]
OrganismDanio rerio (zebrafish)
Synonym(s)cb679, fc12c03, sb:cb679, wu:fc12c03, zgc:92611
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.15e3
  • 1.15e3
96.15
  • 96.15
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.33e3
  • 1.33e3
  • 1.70e3
95.55
  • 95.55
  • 94.30
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.35e3
  • 1.35e3
95.47
  • 95.47
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.36e3
  • 1.36e3
  • 1.45e3
  • 1.65e3
  • 2.26e3
  • 2.51e3
95.46
  • 95.46
  • 95.15
  • 94.47
  • 92.43
  • 91.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.43
  • 95.43
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.32
  • 95.32
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.22
  • 95.22
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.46e3
  • 1.46e3
  • 2.01e3
95.13
  • 95.13
  • 93.28
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.47e3
  • 1.47e3
95.08
  • 95.08
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.64e3
  • 1.64e3
  • 1.66e3
94.51
  • 94.51
  • 94.44
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.65e3
  • 1.65e3
94.49
  • 94.49
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.86e3
  • 1.86e3
93.78
  • 93.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
93.68
  • 93.68
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.16
  • 93.16
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
  • 2.49e3
93.02
  • 93.02
  • 91.67
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.27e3
  • 2.27e3
92.41
  • 92.41
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.25
  • 92.25
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.07
  • 92.07
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
2.54e3
  • 2.54e3
  • 4.33e3
91.49
  • 91.49
  • 85.51
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.47
  • 91.47
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.89
  • 90.89
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
89.06
  • 89.06
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.69e3
  • 3.69e3
87.63
  • 87.63
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.28
  • 80.28
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
7.14e3
  • 7.14e3
  • 1.07e4
  • 1.10e4
76.09
  • 76.09
  • 64.26
  • 63.02
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species18 genesCompare expression
Bilateria24 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000057299.

Cross-references

EnsemblENSDARG00000057299 (pbdc1)
ZFINZDB-GENE-040718-459 (pbdc1)
EMBLBC076102, BC153584, CR450836
Uniprot/SPTREMBLQ6DH77, Q6DH77_DANRE

Do not show this banner again