D. rerio Gene: tmem47 - ENSDARG00000057322 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057322
Nametmem47
Descriptiontransmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
OrganismDanio rerio (zebrafish)
Synonym(s)ch211-232d19.7, tm4sf10, wu:fb99e01, zgc:63990, zgc:63990gn
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
898
  • 898
  • 3.05e3
  • 4.01e3
  • 4.08e3
  • 4.50e3
  • 5.87e3
  • 6.00e3
  • 8.03e3
  • 8.13e3
  • 1.03e4
97.00
  • 97.00
  • 89.78
  • 86.58
  • 86.35
  • 84.93
  • 80.35
  • 79.91
  • 73.11
  • 72.79
  • 65.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.37
  • 96.37
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.09
  • 91.09
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
2.68e3
  • 2.68e3
  • 2.93e3
  • 3.05e3
  • 3.06e3
  • 3.90e3
  • 5.24e3
  • 5.52e3
  • 6.76e3
  • 9.79e3
  • 1.29e4
  • 1.34e4
  • 1.38e4
91.01
  • 91.01
  • 90.20
  • 89.79
  • 89.75
  • 86.95
  • 82.47
  • 81.51
  • 77.38
  • 67.23
  • 56.89
  • 55.28
  • 53.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.95e3
  • 2.95e3
  • 3.46e3
  • 4.64e3
90.13
  • 90.13
  • 88.42
  • 84.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
  • 7.29e3
89.27
  • 89.27
  • 75.61
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
  • 4.19e3
89.17
  • 89.17
  • 85.98
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.28e3
  • 3.28e3
  • 4.39e3
89.04
  • 89.04
  • 85.31
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.12
  • 87.12
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
  • 5.74e3
84.85
  • 84.85
  • 80.79
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.06
  • 83.06
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.54e3
  • 5.54e3
81.47
  • 81.47
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.72
  • 80.72
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
  • 6.20e3
  • 1.09e4
  • 1.15e4
79.60
  • 79.60
  • 79.23
  • 63.48
  • 61.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.36
  • 79.36
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.85e3
  • 7.85e3
73.70
  • 73.70
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.50e3
  • 8.50e3
71.54
  • 71.54
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
8.57e3
  • 8.57e3
  • 9.06e3
71.32
  • 71.32
  • 69.66
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.95e3
  • 8.95e3
70.05
  • 70.05
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.01e4
  • 1.01e4
66.32
  • 66.32
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.68
  • 65.68
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.57
  • 65.57
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.06e4
  • 1.06e4
64.49
  • 64.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.89
  • 63.89
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.11e4
  • 1.11e4
  • 1.32e4
  • 1.75e4
62.89
  • 62.89
  • 55.68
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.13e4
  • 1.13e4
62.17
  • 62.17
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.50
  • 61.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.26
  • 55.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.31
  • 54.31
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.25
  • 52.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi12 species12 genesCompare expression
Bilateria19 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000057322.

Cross-references

EnsemblENSDARG00000057322 (tmem47)
ZFINZDB-GENE-040426-2644 (tmem47)
EMBLAL844185, BC057424, BC164961, BX247907
Uniprot/SPTREMBLQ1LY05, Q1LY05_DANRE
Uniprot/SWISSPROTQ6PFT6, TMM47_DANRE

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