D. rerio Gene: pgap3 - ENSDARG00000057531 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057531
Namepgap3
Descriptionpost-GPI attachment to proteins 3 [Source:ZFIN;Acc:ZDB-GENE-080204-27]
OrganismDanio rerio (zebrafish)
Synonym(s)perld1, zgc:171485

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
2.13e3
  • 2.13e3
  • 6.51e3
92.87
  • 92.87
  • 78.20
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
3.26e3
  • 3.26e3
  • 6.27e3
89.07
  • 89.07
  • 79.02
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
85.21
  • 85.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.46e3
  • 4.46e3
85.05
  • 85.05
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.87
  • 71.87
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.53e3
  • 9.53e3
68.10
  • 68.10
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.82e3
  • 9.82e3
67.11
  • 67.11
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
  • 1.16e4
63.68
  • 63.68
  • 61.20
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.83
  • 61.83
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.68
  • 61.68
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.15e4
  • 1.15e4
61.48
  • 61.48
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.91
  • 55.91
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.33e4
  • 1.33e4
  • 1.44e4
  • 1.49e4
  • 1.76e4
  • 1.82e4
55.56
  • 55.56
  • 51.73
  • 50.11
  • 41.15
  • 39.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.52
  • 55.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.90
  • 54.90
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.48
  • 54.48
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.62
  • 52.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.11
  • 52.11
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.50
  • 48.50
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.37
  • 46.37
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.37
  • 45.37
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.65
  • 41.65
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.75e4
  • 1.75e4
  • 1.87e4
41.30
  • 41.30
  • 37.42
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

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