We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

D. rerio Gene: slc17a8 - ENSDARG00000057728 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057728
Nameslc17a8
Descriptionsolute carrier family 17 (vesicular glutamate transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-416]
OrganismDanio rerio (zebrafish)
Synonym(s)asteroid, si:ch211-264e16.4, vesicular glutamate transporter 3, vglut3
Orthologs(s)25 orthologs
Paralog(s)32 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001846internal ear
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.25
  • 50.25
AEIR
  • AEIR
CL:0000855sensory hair cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.75e4
  • 1.75e4
41.44
  • 41.44
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.91
  • 37.91
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.86e4
  • 1.86e4
  • 2.20e4
37.78
  • 37.78
  • 26.27
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
1.86e4
  • 1.86e4
  • 2.10e4
37.77
  • 37.77
  • 29.66
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.79
  • 33.79
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.60
  • 30.60
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.25
  • 28.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000057728.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000057728 (slc17a8)
ZFINZDB-GENE-060503-416 (slc17a8)
EMBLCR536616
Uniprot/SWISSPROTQ1L8X9, VGLU3_DANRE

Do not show this banner again