Gene: slc17a8 - ENSDARG00000057728 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000057728
Name	slc17a8
Description	solute carrier family 17 (vesicular glutamate transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-416]
Organism	Danio rerio (zebrafish)
Synonym(s)	asteroid, si:ch211-264e16.4, vesicular glutamate transporter 3, vglut3
Orthologs(s)	25 orthologs
Paralog(s)	32 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001846	internal ear	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.19e4 1.19e4	60.00 60.00	AEIR AEIR
UBERON:0008904	neuromast	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.28e4 1.28e4	57.14 57.14	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.49e4 1.49e4	50.25 50.25	AEIR AEIR
CL:0000855	sensory hair cell	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.75e4 1.75e4	41.44 41.44	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.85e4 1.85e4	37.91 37.91	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.86e4 1.86e4 2.20e4	37.78 37.78 26.27	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	1.86e4 1.86e4 2.10e4	37.77 37.77 29.66	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.98e4 1.98e4	33.79 33.79	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.07e4 2.07e4	30.60 30.60	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	2.14e4 2.14e4	28.25 28.25	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000179520 SLC17A8 ENSMUSG00000019935 Slc17a8 ENSPTRG00000005344 SLC17A8 ENSGGOG00000016824 SLC17A8 ENSMMUG00000017646 SLC17A8 ENSRNOG00000007581 Slc17a8 ENSBTAG00000001088 SLC17A8 ENSECAG00000013826 SLC17A8 ENSOCUG00000015995 SLC17A8 ENSCAFG00000006786 SLC17A8 ENSFCAG00000018638 SLC17A8 ENSCPOG00000009083 SLC17A8 ENSEEUG00000015368 SLC17A8 ENSMODG00000005023 SLC17A8 ENSOANG00000005584 SLC17A8 ENSGALG00000011582 SLC17A8 ENSACAG00000012416 SLC17A8 ENSXETG00000033364 SLC17A8	Compare expression	[+]
Bilateria	25 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	25 genes ENSG00000179520 SLC17A8 ENSMUSG00000019935 Slc17a8 FBgn0031424 VGlut WBGene00001135 eat-4 ENSPTRG00000005344 SLC17A8 ENSGGOG00000016824 SLC17A8 ENSMMUG00000017646 SLC17A8 ENSRNOG00000007581 Slc17a8 ENSBTAG00000001088 SLC17A8 ENSECAG00000013826 SLC17A8 ENSOCUG00000015995 SLC17A8 ENSCAFG00000006786 SLC17A8 ENSFCAG00000018638 SLC17A8 ENSCPOG00000009083 SLC17A8 ENSEEUG00000015368 SLC17A8 ENSMODG00000005023 SLC17A8 ENSOANG00000005584 SLC17A8 ENSGALG00000011582 SLC17A8 ENSACAG00000012416 SLC17A8 ENSXETG00000033364 SLC17A8 FBgn0092533 GF15508 FBgn0138288 GI15539 FBgn0194544 GD23154 FBgn0204465 GJ17290 FBgn0235587 GE18154	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000057728.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	4 genes ENSDARG00000001127 slc17a6a ENSDARG00000016480 slc17a7a ENSDARG00000041150 slc17a6b ENSDARG00000090106 slc17a7b	Compare expression	[+]
Eukaryota	32 genes ENSDARG00000001127 slc17a6a ENSDARG00000005335 slc22a4 ENSDARG00000006356 slc18a3a ENSDARG00000011049 slc17a9b ENSDARG00000011925 spns1 ENSDARG00000014951 svopb ENSDARG00000015110 slc18a2 ENSDARG00000015869 slc22a16 ENSDARG00000016480 slc17a7a ENSDARG00000019713 oatx ENSDARG00000035459 spns3 ENSDARG00000038106 slc37a4a ENSDARG00000041150 slc17a6b ENSDARG00000042954 slc17a9a ENSDARG00000044047 slc18b1 ENSDARG00000055523 slc22a6l ENSDARG00000056551 slc22a13 ENSDARG00000056643 slc22a7b.1 ENSDARG00000056652 SLC22A7 (1 to many) ENSDARG00000056833 svopa ENSDARG00000057983 svopl ENSDARG00000058775 SLC22A3 ENSDARG00000061017 spns2 ENSDARG00000062873 slc2a11l ENSDARG00000076899 slc2a13b ENSDARG00000077180 slc37a4b ENSDARG00000078157 SLC18A1 ENSDARG00000087867 SLC2A13 ENSDARG00000090106 slc17a7b ENSDARG00000099322 SLC37A3 ENSDARG00000101021 slc22a5 ENSDARG00000104278 slc2a8	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000057728.

Cross-references

Ensembl	ENSDARG00000057728 (slc17a8)
ZFIN	ZDB-GENE-060503-416 (slc17a8)
EMBL	CR536616
Uniprot/SWISSPROT	Q1L8X9, VGLU3_DANRE