D. rerio Gene: dnmt3bb.3 - ENSDARG00000057863 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057863
Namednmt3bb.3
DescriptionDNA (cytosine-5-)-methyltransferase beta, duplicate b.3 [Source:ZFIN;Acc:ZDB-GENE-050314-2]
OrganismDanio rerio (zebrafish)
Synonym(s)dnmt3-2, dnmt3b4, dnmt5, wu:fc08a10, zgc:136325
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.44e3
  • 2.44e3
91.83
  • 91.83
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
89.27
  • 89.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.56
  • 88.56
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.54
  • 88.54
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.61e3
  • 3.61e3
87.92
  • 87.92
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.88e3
  • 3.88e3
86.99
  • 86.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
4.31e3
  • 4.31e3
  • 4.71e3
  • 5.17e3
  • 7.01e3
  • 9.64e3
85.58
  • 85.58
  • 84.24
  • 82.69
  • 76.52
  • 67.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000036Larval:Day 4
4.38e3
  • 4.38e3
  • 9.20e3
  • 9.28e3
  • 9.66e3
  • 9.71e3
  • 9.99e3
  • 1.00e4
  • 1.15e4
  • 1.21e4
  • 1.34e4
  • 1.46e4
  • 1.47e4
  • 1.48e4
  • 1.48e4
  • 1.50e4
  • 1.51e4
85.35
  • 85.35
  • 69.21
  • 68.94
  • 67.65
  • 67.50
  • 66.54
  • 66.40
  • 61.59
  • 59.36
  • 54.98
  • 51.12
  • 50.74
  • 50.54
  • 50.41
  • 49.80
  • 49.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.58e3
  • 5.58e3
81.33
  • 81.33
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
6.34e3
  • 6.34e3
  • 7.42e3
  • 8.94e3
  • 9.16e3
  • 9.83e3
  • 9.89e3
78.76
  • 78.76
  • 75.15
  • 70.05
  • 69.34
  • 67.09
  • 66.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
77.31
  • 77.31
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
  • 1.70e4
77.30
  • 77.30
  • 43.22
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.83e3
  • 6.83e3
  • 7.57e3
  • 7.79e3
  • 1.04e4
  • 1.12e4
  • 1.13e4
  • 1.33e4
  • 1.39e4
  • 1.39e4
  • 1.53e4
77.12
  • 77.12
  • 74.65
  • 73.92
  • 65.23
  • 62.50
  • 62.15
  • 55.60
  • 53.53
  • 53.30
  • 48.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
8.16e3
  • 8.16e3
  • 1.12e4
  • 2.31e4
72.67
  • 72.67
  • 62.50
  • 22.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.97e3
  • 8.97e3
69.97
  • 69.97
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.01e3
  • 9.01e3
69.83
  • 69.83
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.07e3
  • 9.07e3
69.62
  • 69.62
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.62e3
  • 9.62e3
67.79
  • 67.79
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.70e3
  • 9.70e3
  • 1.23e4
67.52
  • 67.52
  • 58.98
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.36
  • 67.36
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.07e4
  • 1.19e4
66.67
  • 66.67
  • 64.28
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.58
  • 65.58
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
64.79
  • 64.79
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.05e4
  • 1.05e4
64.76
  • 64.76
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.21e4
  • 1.21e4
  • 1.28e4
59.36
  • 59.36
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.02
  • 58.02
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.31e4
  • 1.31e4
  • 1.33e4
56.13
  • 56.13
  • 55.42
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.33e4
  • 1.33e4
  • 1.62e4
  • 1.66e4
55.37
  • 55.37
  • 45.82
  • 44.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.37e4
  • 1.41e4
55.24
  • 55.24
  • 54.15
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.40e4
  • 1.40e4
54.53
  • 54.53
  • 53.10
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.42
  • 52.42
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.93
  • 46.93
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.87
  • 46.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.58
  • 45.58
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.91
  • 42.91
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.26
  • 41.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000057863.

Cross-references

EnsemblENSDARG00000057863 (dnmt3bb.3)
ZFINZDB-GENE-050314-2 (dnmt3bb.3)
EMBLCR356239
Uniprot/SPTREMBLA3QJU7, A3QJU7_DANRE, A3QJU8, A3QJU8_DANRE, A3QJU9, A3QJU9_DANRE

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