D. rerio Gene: tsc1b - ENSDARG00000057918 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057918
Nametsc1b
Descriptiontuberous sclerosis 1b [Source:ZFIN;Acc:ZDB-GENE-030131-3404]
OrganismDanio rerio (zebrafish)
Synonym(s)fc38b04, tsc1, wu:fc38b04
Orthologs(s)23 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
908
  • 908
96.96
  • 96.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
93.33
  • 93.33
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
2.23e3
  • 2.23e3
92.53
  • 92.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
88.48
  • 88.48
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
3.94e3
  • 3.94e3
  • 4.27e3
  • 5.51e3
  • 6.07e3
  • 6.43e3
  • 6.43e3
  • 6.72e3
  • 6.81e3
  • 6.90e3
  • 6.98e3
  • 7.07e3
  • 7.27e3
  • 7.41e3
  • 7.46e3
86.81
  • 86.81
  • 85.71
  • 81.54
  • 79.69
  • 78.48
  • 78.47
  • 77.50
  • 77.20
  • 76.91
  • 76.63
  • 76.31
  • 75.66
  • 75.17
  • 75.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.24e3
  • 4.24e3
85.81
  • 85.81
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
85.37
  • 85.37
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
4.41e3
  • 4.41e3
  • 4.46e3
  • 5.00e3
  • 6.87e3
  • 6.98e3
85.25
  • 85.25
  • 85.05
  • 83.25
  • 77.01
  • 76.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.65e3
  • 4.65e3
84.44
  • 84.44
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 1.24e4
83.33
  • 83.33
  • 58.38
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
5.98e3
  • 5.98e3
  • 6.21e3
  • 7.91e3
  • 8.18e3
  • 8.28e3
  • 8.69e3
79.97
  • 79.97
  • 79.22
  • 73.53
  • 72.60
  • 72.29
  • 70.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.32e3
  • 6.32e3
78.84
  • 78.84
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
77.74
  • 77.74
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.78e3
  • 6.78e3
77.29
  • 77.29
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.80e3
  • 6.80e3
77.24
  • 77.24
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.91e3
  • 6.91e3
76.87
  • 76.87
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.16e3
  • 7.16e3
  • 9.37e3
76.03
  • 76.03
  • 68.64
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.23e3
  • 7.23e3
75.78
  • 75.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
75.10
  • 75.10
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
7.60e3
  • 7.60e3
  • 8.28e3
  • 8.75e3
  • 8.96e3
  • 9.19e3
  • 9.31e3
  • 1.02e4
  • 1.07e4
  • 1.07e4
  • 1.13e4
74.57
  • 74.57
  • 72.28
  • 70.70
  • 70.00
  • 69.24
  • 68.84
  • 65.69
  • 64.19
  • 64.19
  • 62.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.71e3
  • 7.71e3
74.17
  • 74.17
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.82e3
  • 7.82e3
  • 9.01e3
  • 9.05e3
  • 1.09e4
73.81
  • 73.81
  • 69.82
  • 69.71
  • 63.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.20e3
  • 8.20e3
  • 8.23e3
72.55
  • 72.55
  • 72.43
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
8.22e3
  • 8.22e3
  • 9.03e3
  • 9.24e3
72.48
  • 72.48
  • 69.77
  • 69.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.48e3
  • 8.48e3
71.61
  • 71.61
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.86e3
  • 8.86e3
70.35
  • 70.35
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.69
  • 69.69
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.09e4
66.64
  • 66.64
  • 63.43
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.17
  • 66.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.64
  • 63.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.30
  • 63.30
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.85
  • 62.85
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.47
  • 62.47
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.48
  • 61.48
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.62
  • 58.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000057918.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000057918.

Cross-references

EnsemblENSDARG00000057918 (tsc1b)
ZFINZDB-GENE-030131-3404 (tsc1b)
EMBLBX088716
Uniprot/SPTREMBLE7FEJ0, E7FEJ0_DANRE

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