Gene: plcd4a - ENSDARG00000057975 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000057975
Name	plcd4a
Description	phospholipase C, delta 4a [Source:ZFIN;Acc:ZDB-GENE-050208-654]
Organism	Danio rerio (zebrafish)
Synonym(s)	drplc-delta 4a, si:dkeyp-84a8.7
Orthologs(s)	19 orthologs
Paralog(s)	5 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.15e4 1.15e4	61.51 61.51	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.16e4 1.16e4	61.25 61.25	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	1.35e4 1.35e4 1.53e4 1.70e4 1.75e4 1.90e4	54.73 54.73 48.81 43.20 41.27 36.25	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000019Gastrula:Shield	1.64e4 1.64e4	45.01 45.01	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.98e4 1.98e4 2.18e4	33.85 33.85 27.07	AEIR AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	2.01e4 2.01e4	32.73 32.73	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.14e4 2.14e4	28.40 28.40	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	2.14e4 2.14e4	28.35 28.35	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000115556 PLCD4 ENSMUSG00000026173 Plcd4 ENSPTRG00000012922 PLCD4 ENSGGOG00000011858 PLCD4 ENSMMUG00000009626 PLCD4 ENSRNOG00000016361 Plcd4 ENSBTAG00000003809 PLCD4 ENSSSCG00000016192 ENSECAG00000012582 PLCD4 ENSOCUG00000001986 PLCD4 ENSCAFG00000014832 PLCD4 ENSFCAG00000004152 PLCD4 ENSCPOG00000015123 PLCD4 ENSEEUG00000013083 PLCD4 ENSMODG00000015407 PLCD4 ENSGALG00000026687 PLCD4 ENSACAG00000002589 PLCD4 ENSXETG00000013830 plcd4	Compare expression	[+]
Bilateria	19 species Homo sapiens (human) Mus musculus (mouse) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000115556 PLCD4 ENSMUSG00000026173 Plcd4 WBGene00004039 plc-4 ENSPTRG00000012922 PLCD4 ENSGGOG00000011858 PLCD4 ENSMMUG00000009626 PLCD4 ENSRNOG00000016361 Plcd4 ENSBTAG00000003809 PLCD4 ENSSSCG00000016192 ENSECAG00000012582 PLCD4 ENSOCUG00000001986 PLCD4 ENSCAFG00000014832 PLCD4 ENSFCAG00000004152 PLCD4 ENSCPOG00000015123 PLCD4 ENSEEUG00000013083 PLCD4 ENSMODG00000015407 PLCD4 ENSGALG00000026687 PLCD4 ENSACAG00000002589 PLCD4 ENSXETG00000013830 plcd4	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000057975.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Euteleostomi	1 gene ENSDARG00000040684 plcd4b	Compare expression	[+]
Bilateria	5 genes ENSDARG00000034080 plcd1b ENSDARG00000040684 plcd4b ENSDARG00000052957 plcd3a ENSDARG00000059123 plcd1a ENSDARG00000079572 plcd3b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000057975.

Cross-references

Ensembl	ENSDARG00000057975 (plcd4a)
ZFIN	ZDB-GENE-050208-654 (plcd4a)
EMBL	BX548072
Uniprot/SPTREMBL	F1Q5G9, F1Q5G9_DANRE, F1Q876, F1Q876_DANRE