D. rerio Gene: svopl - ENSDARG00000057983 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057983
Namesvopl
DescriptionSVOP-like [Source:ZFIN;Acc:ZDB-GENE-041114-109]
OrganismDanio rerio (zebrafish)
Synonym(s)q5u3r1, zgc:101741

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
919
  • 919
  • 1.77e3
  • 2.52e3
  • 2.99e3
  • 4.98e3
  • 5.16e3
96.93
  • 96.93
  • 94.07
  • 91.58
  • 89.99
  • 83.32
  • 82.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
1.62e3
  • 1.62e3
  • 3.63e3
  • 4.29e3
  • 5.92e3
  • 6.21e3
  • 6.98e3
  • 7.73e3
  • 7.91e3
  • 8.92e3
  • 1.04e4
  • 1.14e4
  • 1.32e4
  • 1.34e4
  • 1.38e4
  • 1.47e4
  • 1.49e4
  • 1.57e4
  • 1.58e4
94.57
  • 94.57
  • 87.84
  • 85.65
  • 80.18
  • 79.20
  • 76.63
  • 74.12
  • 73.51
  • 70.13
  • 65.13
  • 61.75
  • 55.70
  • 55.30
  • 53.84
  • 50.90
  • 50.25
  • 47.31
  • 47.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.27e3
  • 2.27e3
92.41
  • 92.41
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
  • 7.04e3
91.73
  • 91.73
  • 76.44
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
2.57e3
  • 2.57e3
  • 3.31e3
  • 4.54e3
  • 5.47e3
  • 6.54e3
91.38
  • 91.38
  • 88.92
  • 84.79
  • 81.70
  • 78.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.07
  • 91.07
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
3.41e3
  • 3.41e3
  • 4.09e3
  • 4.12e3
  • 4.80e3
  • 5.92e3
  • 6.40e3
  • 6.70e3
  • 6.88e3
  • 6.95e3
  • 1.19e4
88.58
  • 88.58
  • 86.31
  • 86.19
  • 83.92
  • 80.16
  • 78.58
  • 77.57
  • 76.95
  • 76.74
  • 60.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.22e3
  • 4.22e3
85.86
  • 85.86
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.96
  • 82.96
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
  • 1.98e4
82.16
  • 82.16
  • 33.70
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.98e3
  • 5.98e3
79.97
  • 79.97
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.89
  • 79.89
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.66e3
  • 6.66e3
77.71
  • 77.71
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.62e3
  • 7.62e3
74.48
  • 74.48
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.92e3
  • 7.92e3
73.47
  • 73.47
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.11e3
  • 9.11e3
  • 9.12e3
  • 1.19e4
69.49
  • 69.49
  • 69.46
  • 60.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.45e3
  • 9.45e3
68.37
  • 68.37
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.09e4
  • 1.12e4
  • 1.15e4
  • 1.20e4
66.66
  • 66.66
  • 66.66
  • 63.63
  • 62.49
  • 61.53
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.03e4
  • 1.03e4
  • 1.18e4
65.57
  • 65.57
  • 60.47
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.76
  • 61.76
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.16e4
  • 1.16e4
  • 1.18e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
61.09
  • 61.09
  • 60.50
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.18e4
60.50
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.05
  • 57.05
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
1.29e4
  • 1.29e4
56.86
  • 56.86
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.33e4
  • 1.33e4
  • 1.33e4
  • 1.34e4
55.53
  • 55.53
  • 55.53
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.58
  • 54.58
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.32
  • 49.32
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.61e4
  • 1.61e4
46.04
  • 46.04
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.31
  • 42.31
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.36
  • 39.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.00
  • 38.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC085429, BX649444
EnsemblENSDARG00000057983 (svopl)
Uniprot/SPTREMBLH0WEJ2, H0WEJ2_DANRE, H0WFF0, H0WFF0_DANRE
Uniprot/SWISSPROTQ1LVS8, SVOPL_DANRE
ZFINZDB-GENE-041114-109 (svopl)

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