D. rerio Gene: hgd - ENSDARG00000058005 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058005
Namehgd
Descriptionhomogentisate 1,2-dioxygenase [Source:ZFIN;Acc:ZDB-GENE-020802-5]
OrganismDanio rerio (zebrafish)
Synonym(s)hgo

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
370
  • 370
  • 9.34e3
  • 9.34e3
  • 1.07e4
98.76
  • 98.76
  • 68.74
  • 68.74
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.85e3
  • 1.85e3
  • 5.56e3
  • 6.99e3
93.81
  • 93.81
  • 81.39
  • 76.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
93.02
  • 93.02
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.18e3
  • 2.18e3
92.71
  • 92.71
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.25e3
  • 2.25e3
92.49
  • 92.49
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
2.25e3
  • 2.25e3
  • 1.06e4
  • 1.41e4
  • 1.49e4
  • 1.57e4
  • 1.72e4
  • 1.81e4
92.46
  • 92.46
  • 64.51
  • 52.82
  • 50.22
  • 47.41
  • 42.53
  • 39.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
2.42e3
  • 2.42e3
  • 3.89e3
  • 6.62e3
  • 1.19e4
  • 1.30e4
  • 1.42e4
  • 1.46e4
  • 1.58e4
  • 1.79e4
91.89
  • 91.89
  • 86.98
  • 77.84
  • 60.00
  • 56.36
  • 52.52
  • 51.01
  • 47.16
  • 40.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.68e3
  • 2.68e3
  • 6.12e3
91.03
  • 91.03
  • 79.50
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.30e3
  • 3.30e3
  • 6.01e3
88.95
  • 88.95
  • 79.87
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.39e3
  • 4.39e3
85.31
  • 85.31
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.94e3
  • 5.94e3
80.11
  • 80.11
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.95e3
  • 5.95e3
80.08
  • 80.08
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.89e3
  • 6.89e3
76.92
  • 76.92
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.13e3
  • 8.13e3
72.78
  • 72.78
AEIR
  • AEIR
UBERON:2000040median fin fold
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.33e4
  • 1.33e4
66.66
  • 66.66
  • 62.49
  • 55.55
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.50
  • 66.50
AEIR
  • AEIR
UBERON:0008897fin
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.46e4
  • 1.47e4
62.50
  • 62.50
  • 51.22
  • 50.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2005316fin fold pectoral fin bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.22e4
62.49
  • 62.49
  • 59.08
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.14e4
  • 1.14e4
  • 1.14e4
  • 1.28e4
61.75
  • 61.75
  • 61.75
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005421pectoral appendage apical ectodermal ridge
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.22e4
  • 1.22e4
  • 1.22e4
59.08
  • 59.08
  • 59.08
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.54
  • 53.54
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000029Pharyngula:Prim-5
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.46e4
  • 1.46e4
  • 1.47e4
51.01
  • 51.01
  • 50.86
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.55e4
49.92
  • 49.92
  • 48.09
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 1.92e4
48.56
  • 48.56
  • 35.75
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.41
  • 47.41
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.57
  • 46.57
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.60e4
  • 1.60e4
46.53
  • 46.53
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.22
  • 43.22
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.72e4
  • 1.72e4
42.34
  • 42.34
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.78e4
  • 1.78e4
40.52
  • 40.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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