D. rerio Gene: six3a - ENSDARG00000058008 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058008
Namesix3a
DescriptionSIX homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-990415-127]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309945.13, etid46760.13, six3, six3.1, wu:fa01b08, wu:fc10a08

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.60e3
  • 1.60e3
  • 2.00e3
  • 2.68e3
  • 1.10e4
94.65
  • 94.65
  • 93.29
  • 91.04
  • 63.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.67e3
  • 1.67e3
94.41
  • 94.41
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000066fully formed stage
4.30e3
  • 4.30e3
  • 8.15e3
  • 8.82e3
  • 9.41e3
  • 1.01e4
  • 1.15e4
  • 1.16e4
  • 1.17e4
  • 1.18e4
  • 1.27e4
  • 1.29e4
  • 1.35e4
  • 1.36e4
  • 1.50e4
85.60
  • 85.60
  • 72.72
  • 70.45
  • 68.49
  • 66.18
  • 61.52
  • 61.21
  • 60.82
  • 60.62
  • 57.51
  • 56.88
  • 54.86
  • 54.46
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
4.45e3
  • 4.45e3
  • 5.09e3
  • 7.04e3
  • 8.02e3
  • 8.57e3
  • 8.68e3
  • 8.81e3
  • 9.13e3
  • 9.39e3
  • 9.65e3
85.09
  • 85.09
  • 82.97
  • 76.43
  • 73.16
  • 71.30
  • 70.94
  • 70.50
  • 69.42
  • 68.55
  • 67.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
4.80e3
  • 4.80e3
  • 5.60e3
  • 7.16e3
83.92
  • 83.92
  • 81.25
  • 76.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
7.12e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 7.97e3
  • 8.22e3
  • 8.30e3
  • 8.71e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.96e3
76.18
  • 76.18
  • 74.99
  • 74.99
  • 73.32
  • 73.32
  • 72.48
  • 72.21
  • 70.82
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.31e3
  • 7.31e3
  • 8.11e3
75.52
  • 75.52
  • 72.84
AEIR
  • AEIR
  • AEIR
UBERON:0002309medial longitudinal fasciculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003080anterior neural tube
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2007024anterior neural keel
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
  • 1.49e4
74.99
  • 74.99
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
7.97e3
  • 7.97e3
  • 1.42e4
73.32
  • 73.32
  • 52.60
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 49.99
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009610forebrain neural plate
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
63.32
  • 63.32
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.93
  • 59.93
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.20e4
  • 1.20e4
  • 1.31e4
  • 1.37e4
  • 1.43e4
  • 1.51e4
59.88
  • 59.88
  • 56.19
  • 54.04
  • 52.04
  • 49.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.46e4
55.16
  • 55.16
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.38
  • 54.38
AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000024Segmentation:5-9 somites
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.44e4
  • 1.44e4
51.65
  • 51.65
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.85
  • 50.85
AEIR
  • AEIR
UBERON:2007014anterior presumptive neural plate
  • ZFS:0000020Gastrula:75%-epiboly
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005569rhombomere 2
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007031anterior neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.59
  • 42.59
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.72e4
  • 1.72e4
42.47
  • 42.47
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.07
  • 34.07
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
2.03e4
  • 2.03e4
32.11
  • 32.11
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
27.85
  • 27.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.35e4
  • 2.35e4
21.19
  • 21.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC059414, BX537274
EnsemblENSDARG00000058008 (six3a)
Uniprot/SPTREMBLQ6PCA5, Q6PCA5_DANRE
ZFINZDB-GENE-990415-127 (six3a)

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