Gene: snf8 - ENSDARG00000058076 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000058076
Name	snf8
Description	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-041114-117]
Organism	Danio rerio (zebrafish)
Synonym(s)	a4vak8, q1l8c5, zgc:101578
Orthologs(s)	24 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	3.38e3 3.38e3	88.68 88.68	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	3.87e3 3.87e3	87.06 87.06	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	3.99e3 3.99e3	86.64 86.64	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	4.00e3 4.00e3	86.61 86.61	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	4.26e3 4.26e3 5.07e3	85.73 85.73 83.03	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	4.58e3 4.58e3 5.19e3	84.67 84.67 82.63	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	4.67e3 4.67e3	84.38 84.38	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	4.71e3 4.71e3 4.82e3	84.24 84.24 83.86	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	4.75e3 4.75e3	84.09 84.09	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000037Larval:Day 5	4.77e3 4.77e3 4.92e3 5.12e3 6.30e3 7.51e3	84.03 84.03 83.54 82.85 78.91 74.85	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	4.92e3 4.92e3 5.31e3	83.53 83.53 82.22	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	4.93e3 4.93e3	83.49 83.49	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	5.07e3 5.07e3	83.04 83.04	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	5.14e3 5.14e3	82.80 82.80	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	5.42e3 5.42e3	81.86 81.86	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	5.52e3 5.52e3	81.52 81.52	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	5.57e3 5.57e3	81.36 81.36	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	5.91e3 5.91e3	80.20 80.20	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	5.99e3 5.99e3 7.02e3	79.95 79.95 76.50	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	6.40e3 6.40e3	78.56 78.56	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	6.43e3 6.43e3	78.47 78.47	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	6.72e3 6.72e3	77.51 77.51	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.71e3 7.71e3	74.17 74.17	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	9.48e3 9.48e3	68.25 68.25	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.10e4 1.10e4	63.08 63.08	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000159210 SNF8 ENSMUSG00000006058 Snf8 ENSGGOG00000025290 SNF8 ENSMMUG00000021087 SNF8 ENSRNOG00000006500 Snf8 ENSBTAG00000018803 SNF8 ENSSSCG00000021461 SNF8 ENSECAG00000022092 SNF8 ENSOCUG00000009156 SNF8 ENSCAFG00000016893 SNF8 ENSFCAG00000008944 SNF8 ENSCPOG00000020610 SNF8 ENSEEUG00000006031 SNF8 ENSMODG00000012276 SNF8 ENSGALG00000001309 SNF8 ENSACAG00000006297 SNF8 ENSXETG00000022819 snf8	Compare expression	[+]
Bilateria	24 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	24 genes ENSG00000159210 SNF8 ENSMUSG00000006058 Snf8 FBgn0260940 lsn WBGene00016167 vps-22 ENSGGOG00000025290 SNF8 ENSMMUG00000021087 SNF8 ENSRNOG00000006500 Snf8 ENSBTAG00000018803 SNF8 ENSSSCG00000021461 SNF8 ENSECAG00000022092 SNF8 ENSOCUG00000009156 SNF8 ENSCAFG00000016893 SNF8 ENSFCAG00000008944 SNF8 ENSCPOG00000020610 SNF8 ENSEEUG00000006031 SNF8 ENSMODG00000012276 SNF8 ENSGALG00000001309 SNF8 ENSACAG00000006297 SNF8 ENSXETG00000022819 snf8 FBgn0095065 GF18047 FBgn0144915 GI22186 FBgn0192359 GD20899 FBgn0211385 GJ24305 FBgn0228118 GE10244	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000058076.

Cross-references

Ensembl	ENSDARG00000058076 (snf8)
ZFIN	ZDB-GENE-041114-117 (snf8)
EMBL	AM422108, BC085373, CR926135
Uniprot/SWISSPROT	Q5U3V9, SNF8_DANRE