D. rerio Gene: ciarta - ENSDARG00000058094 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058094
Nameciarta
Descriptioncircadian associated repressor of transcription a [Source:ZFIN;Acc:ZDB-GENE-030131-7016]
OrganismDanio rerio (zebrafish)
Synonym(s)ciart, fk65b05, si:ch211-284a13.1, wu:fk65b05

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.20e3
  • 1.20e3
  • 1.45e3
  • 1.55e3
  • 3.88e3
  • 5.10e3
96.00
  • 96.00
  • 95.15
  • 94.83
  • 87.01
  • 82.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.39e3
  • 1.39e3
  • 2.36e3
95.36
  • 95.36
  • 92.10
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.52e3
  • 1.52e3
  • 4.73e3
  • 4.82e3
  • 5.60e3
  • 6.84e3
  • 6.96e3
  • 7.95e3
  • 1.00e4
  • 1.05e4
  • 1.08e4
  • 1.09e4
  • 1.14e4
  • 1.16e4
  • 1.26e4
94.91
  • 94.91
  • 84.15
  • 83.87
  • 81.24
  • 77.09
  • 76.71
  • 73.37
  • 66.42
  • 64.99
  • 63.87
  • 63.35
  • 61.98
  • 61.04
  • 57.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.02e3
  • 2.02e3
93.26
  • 93.26
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.02e3
  • 2.02e3
93.23
  • 93.23
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.71e3
  • 2.71e3
90.93
  • 90.93
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.76e3
  • 2.76e3
90.77
  • 90.77
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.97e3
  • 2.97e3
90.04
  • 90.04
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
3.06e3
  • 3.06e3
  • 4.01e3
  • 5.16e3
  • 6.83e3
89.75
  • 89.75
  • 86.56
  • 82.73
  • 77.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
89.31
  • 89.31
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
89.27
  • 89.27
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.23e3
  • 3.23e3
  • 6.61e3
89.19
  • 89.19
  • 77.86
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.15
  • 89.15
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.35e3
  • 3.35e3
88.79
  • 88.79
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
88.38
  • 88.38
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
3.57e3
  • 3.57e3
  • 4.02e3
  • 4.87e3
  • 5.45e3
  • 5.47e3
  • 6.37e3
  • 6.44e3
  • 7.44e3
  • 9.58e3
  • 1.09e4
88.06
  • 88.06
  • 86.54
  • 83.68
  • 81.76
  • 81.69
  • 78.69
  • 78.43
  • 75.08
  • 67.92
  • 63.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.63e3
  • 3.63e3
  • 9.70e3
87.83
  • 87.83
  • 67.52
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.66e3
  • 3.66e3
87.74
  • 87.74
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.77e3
  • 3.77e3
87.36
  • 87.36
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.11e3
  • 4.11e3
  • 4.27e3
  • 5.72e3
86.25
  • 86.25
  • 85.70
  • 80.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.67e3
  • 4.67e3
84.37
  • 84.37
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.00e3
  • 5.00e3
83.26
  • 83.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.14e3
  • 5.14e3
82.81
  • 82.81
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.28e3
  • 5.28e3
82.32
  • 82.32
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.46e3
  • 5.46e3
81.73
  • 81.73
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.56e3
  • 5.56e3
81.38
  • 81.38
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.22
  • 80.22
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.38e3
  • 7.38e3
75.31
  • 75.31
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.22e3
  • 8.22e3
  • 1.10e4
  • 1.12e4
  • 1.27e4
  • 1.39e4
  • 1.39e4
72.46
  • 72.46
  • 63.22
  • 62.38
  • 57.47
  • 53.39
  • 53.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.54e3
  • 8.54e3
  • 8.96e3
  • 1.14e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
71.42
  • 71.42
  • 69.99
  • 61.88
  • 59.98
  • 58.80
  • 58.31
  • 58.31
  • 58.31
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.12e4
  • 1.34e4
  • 1.34e4
  • 1.42e4
63.87
  • 63.87
  • 62.48
  • 62.48
  • 54.97
  • 54.97
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.56
  • 61.56
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000058094 (ciarta)
ZFINZDB-GENE-030131-7016 (ciarta)
EMBLBX248499, CU466434
Uniprot/SPTREMBLQ1LXW3, Q1LXW3_DANRE

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