Gene: b3gnt3 - ENSDARG00000058100 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000058100
Name	b3gnt3
Description	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8875]
Organism	Danio rerio (zebrafish)
Synonym(s)	b3gnt3, wu:fk30b12, zgc:171538
Orthologs(s)	28 orthologs
Paralog(s)	3 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.04e3 1.04e3	96.53 96.53	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	2.23e3 2.23e3	92.55 92.55	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	2.45e3 2.45e3	91.80 91.80	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	2.63e3 2.63e3	91.20 91.20	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	2.86e3 2.86e3 6.07e3	90.44 90.44 79.66	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	3.30e3 3.30e3	88.96 88.96	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	4.23e3 4.23e3	85.85 85.85	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	4.41e3 4.41e3	85.22 85.22	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	5.90e3 5.90e3	80.24 80.24	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	6.36e3 6.36e3	78.71 78.71	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	7.78e3 7.78e3	73.95 73.95	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	7.96e3 7.96e3 1.66e4	73.33 73.33 44.39	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.63 63.63	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.16e4 1.16e4	61.01 61.01	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.20e4 1.20e4 1.34e4	59.92 59.92 55.16	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.24e4 1.24e4	58.33 58.33	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage	1.29e4 1.29e4 1.32e4 1.52e4 1.57e4 1.65e4	56.83 56.83 55.94 49.13 47.55 44.89	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000178	blood	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.31e4 1.31e4	56.23 56.23	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	1.43e4 1.43e4 1.66e4	52.10 52.10 44.43	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.48e4 1.48e4 1.70e4	50.45 50.45 43.05	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.50e4 1.50e4	49.80 49.80	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.58e4 1.58e4	47.26 47.26	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	28 genes ENSG00000179913 B3GNT3 ENSG00000198488 B3GNT6 ENSMUSG00000031803 B3gnt3 ENSMUSG00000074004 B3gnt6 ENSPTRG00000010684 B3GNT3 ENSPTRG00000023606 B3GNT6 ENSGGOG00000000016 B3GNT6 ENSGGOG00000009249 B3GNT3 ENSMMUG00000012280 B3GNT3 ENSMMUG00000018173 B3GNT6 ENSRNOG00000014471 B3gnt6 ENSRNOG00000018764 B3gnt3 ENSBTAG00000046750 B3GNT3 ENSBTAG00000047129 B3GNT6 ENSSSCG00000013886 B3GNT3 ENSSSCG00000014874 B3GNT6 ENSECAG00000019463 B3GNT6 ENSOCUG00000013809 B3GNT6 ENSCAFG00000005189 B3GNT6 ENSCAFG00000015192 B3GNT3 ENSFCAG00000007516 B3GNT3 ENSFCAG00000014442 B3GNT6 ENSCPOG00000026753 B3GNT3 ENSMODG00000019158 B3GNT3 ENSOANG00000002522 B3GNT3 ENSGALG00000027792 B3GNT6 ENSXETG00000004908 b3gnt3 ENSXETG00000016436 XB-GENE-996589	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000058100.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	3 genes ENSDARG00000043482 B3GNT3 (1 to many) ENSDARG00000054373 B3GNT3 (1 to many) ENSDARG00000093521 B3GNT3 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000058100.

Cross-references

Ensembl	ENSDARG00000058100 (b3gnt3)
ZFIN	ZDB-GENE-030131-8875 (b3gnt3)
EMBL	BC153957, CR786572
Uniprot/SPTREMBL	A8KB44, A8KB44_DANRE