D. rerio Gene: trim55b - ENSDARG00000058158 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058158
Nametrim55b
Descriptiontripartite motif containing 55b [Source:ZFIN;Acc:ZDB-GENE-060312-37]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7145460, murf2b, zgc:136833
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.50
  • 96.50
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
96.19
  • 96.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.30e3
  • 1.30e3
95.65
  • 95.65
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.31e3
  • 1.31e3
  • 2.38e3
95.60
  • 95.60
  • 92.03
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
2.62e3
  • 2.62e3
91.24
  • 91.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.01e3
  • 3.01e3
89.93
  • 89.93
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.77e3
  • 6.77e3
77.35
  • 77.35
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
6.88e3
  • 6.88e3
  • 8.37e3
  • 8.91e3
  • 8.97e3
  • 9.33e3
  • 9.73e3
  • 1.02e4
  • 1.54e4
  • 1.63e4
76.97
  • 76.97
  • 71.99
  • 70.17
  • 69.98
  • 68.75
  • 67.43
  • 65.74
  • 48.47
  • 45.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
7.99e3
  • 7.99e3
  • 8.00e3
  • 8.26e3
  • 9.39e3
  • 1.03e4
  • 1.17e4
  • 1.20e4
  • 1.35e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
  • 1.50e4
73.24
  • 73.24
  • 73.22
  • 72.34
  • 68.56
  • 65.37
  • 60.71
  • 59.80
  • 54.88
  • 50.61
  • 50.38
  • 50.37
  • 50.25
  • 49.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
8.54e3
  • 8.54e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 1.14e4
  • 1.20e4
  • 1.25e4
71.42
  • 71.42
  • 69.99
  • 69.99
  • 66.65
  • 61.88
  • 59.98
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
70.77
  • 70.77
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.92e3
  • 8.92e3
  • 9.16e3
  • 1.13e4
70.14
  • 70.14
  • 69.34
  • 62.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.19e3
  • 9.19e3
  • 9.19e3
  • 1.10e4
69.22
  • 69.22
  • 69.22
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
9.92e3
  • 9.92e3
66.79
  • 66.79
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.08e4
66.65
  • 66.65
  • 65.37
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
64.98
  • 64.98
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.67
  • 64.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.88
  • 62.88
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
62.48
  • 62.48
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.13e4
  • 1.13e4
62.19
  • 62.19
AEIR
  • AEIR
ZFA:0001086muscle pioneer (Danio)
  • ZFS:0000026Segmentation:14-19 somites
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.27e4
  • 1.33e4
  • 1.34e4
58.83
  • 58.83
  • 58.72
  • 57.57
  • 55.47
  • 55.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.23e4
  • 1.23e4
  • 1.41e4
58.76
  • 58.76
  • 52.81
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
58.19
  • 58.19
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.89
  • 57.89
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.34e4
  • 1.34e4
55.28
  • 55.28
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.43e4
  • 1.43e4
52.21
  • 52.21
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.51e4
  • 1.51e4
49.52
  • 49.52
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.61e4
  • 1.61e4
46.18
  • 46.18
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.66
  • 44.66
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.19
  • 36.19
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.35e4
  • 2.35e4
21.37
  • 21.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058158.

Cross-references

EnsemblENSDARG00000058158 (trim55b)
ZFINZDB-GENE-060312-37 (trim55b)
EMBLBC114283, CR354424
Uniprot/SPTREMBLQ29RB6, Q29RB6_DANRE

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