D. rerio Gene: ackr3b - ENSDARG00000058179 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058179
Nameackr3b
Descriptionatypical chemokine receptor 3b [Source:ZFIN;Acc:ZDB-GENE-031116-61]
OrganismDanio rerio (zebrafish)
Synonym(s)cxcr7, cxcr7b, cxcr7b {eco:0000313|embl:aai34933.1,gn eco:0000313|zfin:zdb-gene-031116-61}, drrdc1b, sb:cb900, si:dkey-96h14.2
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
752
  • 752
97.49
  • 97.49
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.54e3
  • 1.54e3
  • 5.57e3
94.84
  • 94.84
  • 81.35
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.68e3
  • 1.68e3
  • 2.53e3
  • 2.64e3
  • 2.97e3
  • 3.78e3
  • 4.10e3
  • 4.42e3
  • 4.44e3
  • 4.78e3
  • 7.39e3
94.38
  • 94.38
  • 91.54
  • 91.17
  • 90.05
  • 87.35
  • 86.27
  • 85.20
  • 85.12
  • 83.99
  • 75.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.20
  • 93.20
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.08e3
  • 2.08e3
93.05
  • 93.05
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.41e3
  • 2.41e3
91.92
  • 91.92
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
2.55e3
  • 2.55e3
  • 3.74e3
  • 4.47e3
  • 4.71e3
  • 5.89e3
  • 7.59e3
91.45
  • 91.45
  • 87.47
  • 85.03
  • 84.22
  • 80.27
  • 74.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.90e3
  • 2.90e3
90.30
  • 90.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.03e3
  • 3.03e3
89.85
  • 89.85
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
3.69e3
  • 3.69e3
  • 6.71e3
  • 1.24e4
87.65
  • 87.65
  • 77.52
  • 58.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
  • 6.44e3
87.58
  • 87.58
  • 78.43
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.83e3
  • 3.83e3
  • 9.30e3
87.17
  • 87.17
  • 68.87
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
  • 6.03e3
87.12
  • 87.12
  • 79.80
AEIR
  • AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
4.07e3
  • 4.07e3
  • 7.47e3
  • 1.24e4
86.36
  • 86.36
  • 75.00
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.44e3
  • 4.44e3
85.15
  • 85.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
84.64
  • 84.64
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
83.87
  • 83.87
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.98e3
  • 4.98e3
  • 5.20e3
  • 6.52e3
83.32
  • 83.32
  • 82.60
  • 78.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000109gastrula stage
  • UBERON:0000068embryo stage
5.15e3
  • 5.15e3
  • 5.19e3
  • 5.60e3
  • 6.19e3
  • 6.33e3
  • 6.36e3
  • 6.65e3
  • 6.92e3
  • 7.77e3
  • 9.23e3
  • 1.03e4
  • 1.25e4
  • 1.26e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
82.77
  • 82.77
  • 82.64
  • 81.26
  • 79.26
  • 78.79
  • 78.69
  • 77.74
  • 76.82
  • 74.00
  • 69.09
  • 65.44
  • 58.28
  • 57.94
  • 50.25
  • 49.99
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.35e3
  • 6.35e3
78.73
  • 78.73
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.57
  • 77.57
AEIR
  • AEIR
UBERON:2000228lateral line primordium
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2005115primary posterior lateral line primordium
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2005227protoneuromast
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.25e3
  • 8.25e3
72.39
  • 72.39
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.88
  • 71.88
AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.54e3
  • 8.54e3
  • 8.54e3
  • 1.16e4
  • 1.16e4
  • 1.16e4
71.42
  • 71.42
  • 71.42
  • 61.09
  • 61.09
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
8.57e3
  • 8.57e3
  • 1.06e4
  • 1.08e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.18e4
71.30
  • 71.30
  • 64.56
  • 63.76
  • 62.48
  • 62.48
  • 61.34
  • 60.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.79e3
  • 8.79e3
  • 8.79e3
70.57
  • 70.57
  • 70.57
AEIR
  • AEIR
  • AEIR
UBERON:0007293presumptive rhombomere 6
  • ZFS:0000024Segmentation:5-9 somites
8.96e3
  • 8.96e3
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 1.10e4
  • 1.20e4
  • 1.20e4
69.98
  • 69.98
  • 63.02
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.10e3
  • 9.71e3
  • 9.96e3
  • 1.12e4
  • 1.12e4
69.98
  • 69.98
  • 69.55
  • 67.48
  • 66.65
  • 62.48
  • 62.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.21e3
  • 9.21e3
  • 1.12e4
  • 1.45e4
69.15
  • 69.15
  • 62.50
  • 51.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.34e3
  • 9.34e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.28
  • 65.28
AEIR
  • AEIR
UBERON:2007046midbrain hindbrain boundary neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
  • 1.24e4
58.33
  • 58.33
  • 58.33
AEIR
  • AEIR
  • AEIR
UBERON:0005519rhombomere 6
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.45
  • 57.45
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000025Segmentation:10-13 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000024Segmentation:5-9 somites
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
1.39e4
  • 1.39e4
  • 1.39e4
53.31
  • 53.31
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.55
  • 52.55
AEIR
  • AEIR
CL:0000854interneuromast cell
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010286midbrain neural tube
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • ZFS:0000012Blastula:High
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007290presumptive rhombomere 3
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007292presumptive rhombomere 5
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.88e4
  • 1.88e4
37.01
  • 37.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000058179.

Cross-references

EnsemblENSDARG00000058179 (ackr3b)
ZFINZDB-GENE-031116-61 (ackr3b)
EMBLBC134932, BX784037
Uniprot/SPTREMBLA4IG54, A4IG54_DANRE

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