D. rerio Gene: si:ch211-153b23.5 - ENSDARG00000058206 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058206
Namesi:ch211-153b23.5
Descriptionsi:ch211-153b23.5 [Source:ZFIN;Acc:ZDB-GENE-030131-9744]
OrganismDanio rerio (zebrafish)
Synonym(s)cb252, es1l, sb:cb252, wu:fj10e08
Orthologs(s)5 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
654
  • 654
  • 4.79e3
97.81
  • 97.81
  • 83.98
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.06e3
  • 1.06e3
96.47
  • 96.47
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.68e3
  • 1.68e3
94.38
  • 94.38
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.71e3
  • 1.71e3
  • 2.42e3
94.27
  • 94.27
  • 91.90
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
93.86
  • 93.86
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
2.03e3
  • 2.03e3
  • 2.12e3
  • 2.29e3
  • 3.72e3
  • 5.41e3
93.21
  • 93.21
  • 92.91
  • 92.34
  • 87.55
  • 81.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
2.20e3
  • 2.20e3
  • 1.30e4
92.63
  • 92.63
  • 56.51
AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
3.20e3
  • 3.20e3
  • 3.73e3
  • 4.98e3
  • 5.60e3
89.28
  • 89.28
  • 87.50
  • 83.33
  • 81.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.25e3
  • 3.25e3
89.13
  • 89.13
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
87.62
  • 87.62
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
87.46
  • 87.46
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.88e3
  • 3.88e3
87.00
  • 87.00
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.04e3
  • 4.04e3
86.46
  • 86.46
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
5.38e3
  • 5.38e3
82.00
  • 82.00
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.87
  • 80.87
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
  • 9.65e3
77.63
  • 77.63
  • 67.69
AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.72e3
  • 6.72e3
  • 7.47e3
77.49
  • 77.49
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0000162cloaca
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.71e3
  • 8.71e3
74.99
  • 74.99
  • 74.99
  • 70.82
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.91e3
  • 9.67e3
  • 9.67e3
74.99
  • 74.99
  • 73.52
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
7.91e3
  • 7.91e3
  • 8.40e3
  • 9.34e3
  • 9.34e3
  • 1.20e4
  • 1.20e4
  • 1.26e4
73.52
  • 73.52
  • 71.86
  • 68.74
  • 68.74
  • 59.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
8.54e3
  • 8.54e3
  • 9.34e3
  • 1.03e4
71.42
  • 71.42
  • 68.74
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.60e3
  • 9.60e3
  • 1.03e4
  • 1.03e4
67.85
  • 67.85
  • 65.37
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.50
  • 63.50
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.82
  • 62.82
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
1.16e4
  • 1.16e4
  • 1.30e4
  • 1.40e4
  • 1.44e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
61.10
  • 61.10
  • 56.38
  • 53.18
  • 51.88
  • 50.25
  • 49.95
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
1.16e4
  • 1.16e4
61.09
  • 61.09
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.03
  • 61.03
AEIR
  • AEIR
UBERON:0007383enveloping layer of ectoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.34e4
  • 1.34e4
  • 1.34e4
59.08
  • 59.08
  • 59.08
  • 58.32
  • 54.99
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.44
  • 54.44
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.09
  • 54.09
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.57
  • 52.57
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.52
  • 49.52
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.33
  • 49.33
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.71e4
  • 1.71e4
42.57
  • 42.57
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.74e4
  • 1.74e4
41.58
  • 41.58
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058206.

Cross-references

EnsemblENSDARG00000058206 (si:ch211-153b23.5)
ZFINZDB-GENE-030131-9744 (si:ch211-153b23.5)
EMBLCR381540
Uniprot/SPTREMBLE7F569, E7F569_DANRE

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