Gene: otpb - ENSDARG00000058379 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000058379
Name	otpb
Description	orthopedia homeobox b [Source:ZFIN;Acc:ZDB-GENE-990708-7]
Organism	Danio rerio (zebrafish)
Synonym(s)	cb977, otp, otp a, otp1, otpa, q9w7m5

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001898	hypothalamus	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000035Larval:Protruding-mouth ZFS:0000029Pharyngula:Prim-5	1.07e3 1.07e3 2.99e3 6.64e3 1.12e4 1.36e4	96.43023 96.43023 90.00000 77.77444 62.49329 54.53206	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25 UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage ZFS:0000030Pharyngula:Prim-15 ZFS:0000029Pharyngula:Prim-5 ZFS:0000025Segmentation:10-13 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000024Segmentation:5-9 somites	1.83e3 1.83e3 2.36e3 5.48e3 5.87e3 6.44e3 6.66e3 6.97e3 1.30e4 1.31e4 1.40e4	93.85902 93.85902 92.08666 81.64953 80.34759 78.43345 77.71326 76.66172 56.58159 56.08107 53.14891	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	2.89e3 2.89e3	90.33342 90.33342	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	2.89e3 2.89e3 2.12e4	90.31932 90.31932 29.02254	AEIR AEIR AEIR
UBERON:0001928	preoptic area	[+] 6 stages ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000035Larval:Protruding-mouth ZFS:0000037Larval:Day 5	2.99e3 2.99e3 4.98e3 4.98e3 4.98e3 1.24e4 1.49e4	90.00000 90.00000 83.33500 83.33500 83.33500 58.32830 49.99498	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 12 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000036Larval:Day 4 ZFS:0000029Pharyngula:Prim-5 ZFS:0000040Larval:Days 14-20 ZFS:0000026Segmentation:14-19 somites ZFS:0000024Segmentation:5-9 somites UBERON:0000066fully formed stage ZFS:0000022Gastrula:Bud UBERON:0000109gastrula stage ZFS:0000019Gastrula:Shield	3.40e3 3.40e3 5.52e3 5.85e3 8.54e3 1.04e4 1.22e4 1.36e4 1.44e4 1.47e4 1.49e4 1.49e4 1.78e4	88.60145 88.60145 81.52249 80.42715 71.42233 65.23280 59.00804 54.58266 51.83970 50.68372 50.14670 49.99498 40.37866	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002028	hindbrain	[+] 9 stages ZFS:0000033Hatching:Long-pec ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000031Pharyngula:Prim-25 ZFS:0000026Segmentation:14-19 somites ZFS:0000030Pharyngula:Prim-15 ZFS:0000035Larval:Protruding-mouth ZFS:0000032Pharyngula:High-pec	3.74e3 3.74e3 4.27e3 4.48e3 4.80e3 9.10e3 9.71e3 1.05e4 1.07e4 1.10e4	87.49496 87.49496 85.70760 84.99330 83.91685 69.54512 67.48157 64.97991 64.27231 63.13780	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001893	telencephalon	[+] 8 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec ZFS:0000035Larval:Protruding-mouth	3.93e3 3.93e3 4.15e3 4.98e3 8.30e3 9.44e3 1.10e4 1.12e4 1.28e4	86.83709 86.83709 86.10608 83.32328 72.20882 68.40431 63.13780 62.48324 57.13616	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 3 stages UBERON:0000069larval stage ZFS:0000035Larval:Protruding-mouth ZFS:0000037Larval:Day 5	4.36e3 4.36e3 4.59e3 7.57e3	85.40860 85.40860 84.63530 74.63808	AEIR AEIR AEIR AEIR
UBERON:2000633	caudal tuberculum	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000031Pharyngula:Prim-25 ZFS:0000030Pharyngula:Prim-15 ZFS:0000035Larval:Protruding-mouth	4.98e3 4.98e3 5.97e3 5.97e3 1.12e4 1.19e4	83.33165 83.33165 80.00000 80.00000 62.49831 59.99665	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001894	diencephalon	[+] 9 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000033Hatching:Long-pec ZFS:0000026Segmentation:14-19 somites ZFS:0000030Pharyngula:Prim-15 ZFS:0000035Larval:Protruding-mouth ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec	4.98e3 4.98e3 5.20e3 5.50e3 6.64e3 8.30e3 8.45e3 1.09e4 1.09e4 1.14e4	83.32328 83.32328 82.59863 81.57057 77.76774 72.20882 71.72072 63.62633 63.61293 61.74627	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 3 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage UBERON:0000104life cycle	5.10e3 5.10e3 7.68e3 1.49e4	82.93052 82.93052 74.28420 49.94307	AEIR AEIR AEIR AEIR
UBERON:0001049	neural tube	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	5.20e3 5.20e3 5.23e3 5.23e3	82.59863 82.59863 82.49161 82.49161	AEIR AEIR AEIR AEIR
CL:0000540	neuron	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	5.23e3 5.23e3 5.23e3 6.11e3	82.49161 82.49161 82.49161 79.53374	AEIR AEIR AEIR AEIR
UBERON:0002240	spinal cord	[+] 7 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000031Pharyngula:Prim-25	5.23e3 5.23e3 5.23e3 5.87e3 1.02e4 1.02e4 1.05e4 1.09e4	82.49161 82.49161 82.49161 80.34206 65.88732 65.77105 64.68915 63.61293	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001890	forebrain	[+] 5 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000031Pharyngula:Prim-25 ZFS:0000025Segmentation:10-13 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000029Pharyngula:Prim-5	5.98e3 5.98e3 9.19e3 9.96e3 1.14e4 1.33e4	79.99330 79.99330 69.22071 66.66668 61.74627 55.53213	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	7.46e3 7.46e3	75.00921 75.00921	AEIR AEIR
CL:0000530	primary neuron	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	7.47e3 7.47e3	74.99665 74.99665	AEIR AEIR
UBERON:0009614	hindbrain neural plate	[+] 3 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites	7.47e3 7.47e3 9.19e3 9.19e3	74.99163 74.99163 69.22071 69.22071	AEIR AEIR AEIR AEIR
UBERON:0007010	cleaving embryo	[+] 1 stage ZFS:0000005Cleavage:16-cell	7.91e3 7.91e3	73.51013 73.51013	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	9.14e3 9.14e3	69.40317 69.40317	AEIR AEIR
UBERON:0006222	future diencephalon	[+] 3 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000025Segmentation:10-13 somites	9.19e3 9.19e3 9.96e3 9.96e3	69.22071 69.22071 66.65663 66.65663	AEIR AEIR AEIR AEIR
UBERON:0001017	central nervous system	[+] 1 stage ZFS:0000024Segmentation:5-9 somites	9.96e3 9.96e3	66.66668 66.66668	AEIR AEIR
UBERON:0000007	pituitary gland	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25	9.96e3 9.96e3 1.49e4	66.65663 66.65663 49.98828	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 4 stages ZFS:0000016Blastula:30%-epiboly ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell ZFS:0000009Blastula:256-cell	1.04e4 1.04e4 1.27e4 1.36e4 1.66e4	65.34374 65.34374 57.37839 54.35660 44.31742	AEIR AEIR AEIR AEIR AEIR
UBERON:0000465	material anatomical entity	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	1.14e4 1.14e4 1.20e4	61.88132 61.88132 59.97656	AEIR AEIR AEIR
UBERON:0005507	rhombomere 3	[+] 2 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000025Segmentation:10-13 somites	1.19e4 1.19e4 1.49e4	59.99665 59.99665 49.99665	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.22e4 1.22e4	59.04698 59.04698	AEIR AEIR
UBERON:0005511	rhombomere 4	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	1.24e4 1.24e4	58.32830 58.32830	AEIR AEIR
UBERON:0005515	rhombomere 5	[+] 2 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000025Segmentation:10-13 somites	1.24e4 1.24e4 1.28e4	58.32830 58.32830 57.13616	AEIR AEIR AEIR
UBERON:0004128	optic vesicle	[+] 1 stage ZFS:0000024Segmentation:5-9 somites	1.28e4 1.28e4	57.12611 57.12611	AEIR AEIR
UBERON:0003098	optic stalk	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.29e4 1.29e4	56.64826 56.64826	AEIR AEIR
UBERON:0001892	rhombomere	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15	1.31e4 1.31e4 1.49e4	56.24164 56.24164 49.98828	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.34e4 1.34e4	55.26119 55.26119	AEIR AEIR
UBERON:0002539	pharyngeal arch	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.36e4 1.36e4	54.53206 54.53206	AEIR AEIR
UBERON:2007026	forebrain neural keel	[+] 1 stage ZFS:0000023Segmentation:1-4 somites	1.39e4 1.39e4	53.55303 53.55303	AEIR AEIR
UBERON:0003075	neural plate	[+] 1 stage ZFS:0000022Gastrula:Bud	1.39e4 1.39e4	53.31323 53.31323	AEIR AEIR
UBERON:0000204	ventral part of telencephalon	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	1.49e4 1.49e4	50.00167 50.00167	AEIR AEIR
UBERON:0002287	optic recess of third ventricle	[+] 1 stage ZFS:0000030Pharyngula:Prim-15	1.49e4 1.49e4	50.00167 50.00167	AEIR AEIR
UBERON:0005499	rhombomere 1	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	1.49e4 1.49e4	50.00167 50.00167	AEIR AEIR
UBERON:2001343	telencephalon diencephalon boundary	[+] 4 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4 1.49e4 1.49e4 1.49e4	50.00167 50.00167 50.00000 50.00000 50.00000	AEIR AEIR AEIR AEIR AEIR
UBERON:2001366	tract of the postoptic commissure	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.49e4 1.49e4	50.00167 50.00167	AEIR AEIR
ZFA:0000634	caudal hypothalamic zone (Danio)	[+] 3 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4 1.49e4 1.49e4	50.00167 50.00167 50.00167 50.00000	AEIR AEIR AEIR AEIR
ZFA:0000690	supraoptic commissure (Danio)	[+] 2 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000031Pharyngula:Prim-25	1.49e4 1.49e4 1.49e4	50.00167 50.00167 50.00167	AEIR AEIR AEIR
CL:0000700	dopaminergic neuron	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4	50.00000 50.00000	AEIR AEIR
UBERON:0002286	third ventricle	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.49e4 1.49e4	50.00000 50.00000	AEIR AEIR
UBERON:0005569	rhombomere 2	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	1.49e4 1.49e4	49.99833 49.99833	AEIR AEIR
UBERON:0007292	presumptive rhombomere 5	[+] 1 stage ZFS:0000023Segmentation:1-4 somites	1.49e4 1.49e4	49.99665 49.99665	AEIR AEIR
UBERON:2007034	forebrain neural rod	[+] 1 stage ZFS:0000024Segmentation:5-9 somites	1.49e4 1.49e4	49.98995 49.98995	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.93972 49.93972	AEIR AEIR
UBERON:0000473	testis	[+] 2 stages UBERON:0000104life cycle UBERON:0000066fully formed stage	1.50e4 1.50e4 1.84e4	49.91628 49.91628 38.32050	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 3 stages UBERON:0000109gastrula stage ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	1.57e4 1.57e4 1.59e4 1.72e4	47.34092 47.34092 46.71905 42.32572	AEIR AEIR AEIR AEIR
UBERON:0000948	heart	[+] 1 stage ZFS:0000036Larval:Day 4	1.71e4 1.71e4	42.70103 42.70103	AEIR AEIR
UBERON:0002199	integument	[+] 1 stage UBERON:0000066fully formed stage	1.77e4 1.77e4	40.77005 40.77005	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.12e4 2.12e4	29.15313 29.15313	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.18e4 2.18e4	26.99615 26.99615	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.32e4 2.32e4	22.44918 22.44918	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	2.38e4 2.38e4	20.27730 20.27730	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Cross-references

EMBL	AF071496, BC076366, BC164107
Ensembl	ENSDARG00000058379 (otpb)
Uniprot/SPTREMBL	B0S6A5, B0S6A5_DANRE
Uniprot/SWISSPROT	OTBP_DANRE, Q6DGH9
ZFIN	ZDB-GENE-990708-7 (otpb)