D. rerio Gene: otpb - ENSDARG00000058379 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058379
Nameotpb
Descriptionorthopedia homeobox b [Source:ZFIN;Acc:ZDB-GENE-990708-7]
OrganismDanio rerio (zebrafish)
Synonym(s)cb977, otp, otp a, otp1, otpa, q9w7m5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
1.07e3
  • 1.07e3
  • 2.99e3
  • 6.64e3
  • 1.12e4
  • 1.36e4
96.43023
  • 96.43023
  • 90.00000
  • 77.77444
  • 62.49329
  • 54.53206
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.83e3
  • 1.83e3
  • 2.36e3
  • 5.48e3
  • 5.87e3
  • 6.44e3
  • 6.66e3
  • 6.97e3
  • 1.30e4
  • 1.31e4
  • 1.40e4
93.85902
  • 93.85902
  • 92.08666
  • 81.64953
  • 80.34759
  • 78.43345
  • 77.71326
  • 76.66172
  • 56.58159
  • 56.08107
  • 53.14891
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.89e3
  • 2.89e3
90.33342
  • 90.33342
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
  • 2.12e4
90.31932
  • 90.31932
  • 29.02254
AEIR
  • AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
2.99e3
  • 2.99e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 1.24e4
  • 1.49e4
90.00000
  • 90.00000
  • 83.33500
  • 83.33500
  • 83.33500
  • 58.32830
  • 49.99498
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
3.40e3
  • 3.40e3
  • 5.52e3
  • 5.85e3
  • 8.54e3
  • 1.04e4
  • 1.22e4
  • 1.36e4
  • 1.44e4
  • 1.47e4
  • 1.49e4
  • 1.49e4
  • 1.78e4
88.60145
  • 88.60145
  • 81.52249
  • 80.42715
  • 71.42233
  • 65.23280
  • 59.00804
  • 54.58266
  • 51.83970
  • 50.68372
  • 50.14670
  • 49.99498
  • 40.37866
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
3.74e3
  • 3.74e3
  • 4.27e3
  • 4.48e3
  • 4.80e3
  • 9.10e3
  • 9.71e3
  • 1.05e4
  • 1.07e4
  • 1.10e4
87.49496
  • 87.49496
  • 85.70760
  • 84.99330
  • 83.91685
  • 69.54512
  • 67.48157
  • 64.97991
  • 64.27231
  • 63.13780
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
3.93e3
  • 3.93e3
  • 4.15e3
  • 4.98e3
  • 8.30e3
  • 9.44e3
  • 1.10e4
  • 1.12e4
  • 1.28e4
86.83709
  • 86.83709
  • 86.10608
  • 83.32328
  • 72.20882
  • 68.40431
  • 63.13780
  • 62.48324
  • 57.13616
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.36e3
  • 4.36e3
  • 4.59e3
  • 7.57e3
85.40860
  • 85.40860
  • 84.63530
  • 74.63808
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
4.98e3
  • 4.98e3
  • 5.97e3
  • 5.97e3
  • 1.12e4
  • 1.19e4
83.33165
  • 83.33165
  • 80.00000
  • 80.00000
  • 62.49831
  • 59.99665
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
4.98e3
  • 4.98e3
  • 5.20e3
  • 5.50e3
  • 6.64e3
  • 8.30e3
  • 8.45e3
  • 1.09e4
  • 1.09e4
  • 1.14e4
83.32328
  • 83.32328
  • 82.59863
  • 81.57057
  • 77.76774
  • 72.20882
  • 71.72072
  • 63.62633
  • 63.61293
  • 61.74627
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.10e3
  • 5.10e3
  • 7.68e3
  • 1.49e4
82.93052
  • 82.93052
  • 74.28420
  • 49.94307
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.20e3
  • 5.20e3
  • 5.23e3
  • 5.23e3
82.59863
  • 82.59863
  • 82.49161
  • 82.49161
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.23e3
  • 5.23e3
  • 5.23e3
  • 6.11e3
82.49161
  • 82.49161
  • 82.49161
  • 79.53374
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
5.23e3
  • 5.23e3
  • 5.23e3
  • 5.87e3
  • 1.02e4
  • 1.02e4
  • 1.05e4
  • 1.09e4
82.49161
  • 82.49161
  • 82.49161
  • 80.34206
  • 65.88732
  • 65.77105
  • 64.68915
  • 63.61293
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 9.19e3
  • 9.96e3
  • 1.14e4
  • 1.33e4
79.99330
  • 79.99330
  • 69.22071
  • 66.66668
  • 61.74627
  • 55.53213
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.46e3
  • 7.46e3
75.00921
  • 75.00921
AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.99665
  • 74.99665
AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 9.19e3
  • 9.19e3
74.99163
  • 74.99163
  • 69.22071
  • 69.22071
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.91e3
  • 7.91e3
73.51013
  • 73.51013
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.14e3
  • 9.14e3
69.40317
  • 69.40317
AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
9.19e3
  • 9.19e3
  • 9.96e3
  • 9.96e3
69.22071
  • 69.22071
  • 66.65663
  • 66.65663
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
66.66668
  • 66.66668
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 1.49e4
66.65663
  • 66.65663
  • 49.98828
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
1.04e4
  • 1.04e4
  • 1.27e4
  • 1.36e4
  • 1.66e4
65.34374
  • 65.34374
  • 57.37839
  • 54.35660
  • 44.31742
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.14e4
  • 1.14e4
  • 1.20e4
61.88132
  • 61.88132
  • 59.97656
AEIR
  • AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.19e4
  • 1.19e4
  • 1.49e4
59.99665
  • 59.99665
  • 49.99665
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
1.22e4
  • 1.22e4
59.04698
  • 59.04698
AEIR
  • AEIR
UBERON:0005511rhombomere 4
  • ZFS:0000027Segmentation:20-25 somites
1.24e4
  • 1.24e4
58.32830
  • 58.32830
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
  • 1.28e4
58.32830
  • 58.32830
  • 57.13616
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.12611
  • 57.12611
AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
56.64826
  • 56.64826
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.31e4
  • 1.31e4
  • 1.49e4
56.24164
  • 56.24164
  • 49.98828
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.26119
  • 55.26119
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53206
  • 54.53206
AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.39e4
  • 1.39e4
53.55303
  • 53.55303
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
1.39e4
  • 1.39e4
53.31323
  • 53.31323
AEIR
  • AEIR
UBERON:0000204ventral part of telencephalon
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
UBERON:0002287optic recess of third ventricle
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
UBERON:0005499rhombomere 1
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
UBERON:2001343telencephalon diencephalon boundary
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00167
  • 50.00167
  • 50.00000
  • 50.00000
  • 50.00000
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001366tract of the postoptic commissure
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
ZFA:0000634caudal hypothalamic zone (Danio)
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00167
  • 50.00167
  • 50.00167
  • 50.00000
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000690supraoptic commissure (Danio)
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
50.00167
  • 50.00167
  • 50.00167
AEIR
  • AEIR
  • AEIR
CL:0000700dopaminergic neuron
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00000
  • 50.00000
AEIR
  • AEIR
UBERON:0002286third ventricle
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00000
  • 50.00000
AEIR
  • AEIR
UBERON:0005569rhombomere 2
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
49.99833
  • 49.99833
AEIR
  • AEIR
UBERON:0007292presumptive rhombomere 5
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
49.99665
  • 49.99665
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.98995
  • 49.98995
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.93972
  • 49.93972
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.84e4
49.91628
  • 49.91628
  • 38.32050
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.57e4
  • 1.57e4
  • 1.59e4
  • 1.72e4
47.34092
  • 47.34092
  • 46.71905
  • 42.32572
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.71e4
  • 1.71e4
42.70103
  • 42.70103
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77005
  • 40.77005
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.15313
  • 29.15313
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
26.99615
  • 26.99615
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.44918
  • 22.44918
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.38e4
  • 2.38e4
20.27730
  • 20.27730
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAF071496, BC076366, BC164107
EnsemblENSDARG00000058379 (otpb)
Uniprot/SPTREMBLB0S6A5, B0S6A5_DANRE
Uniprot/SWISSPROTOTBP_DANRE, Q6DGH9
ZFINZDB-GENE-990708-7 (otpb)

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