D. rerio Gene: zgc:171775 - ENSDARG00000058381 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058381
Namezgc:171775
Descriptionzgc:171775 [Source:ZFIN;Acc:ZDB-GENE-030131-4309]
OrganismDanio rerio (zebrafish)
Synonym(s)fc89f08, wu:fc89f08
Orthologs(s)1 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.57e3
  • 1.57e3
  • 2.79e3
  • 3.23e3
  • 3.85e3
  • 6.83e3
94.75
  • 94.75
  • 90.67
  • 89.20
  • 87.12
  • 77.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.45e3
  • 3.45e3
  • 6.41e3
88.45
  • 88.45
  • 78.54
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
87.28
  • 87.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.63
  • 82.63
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.07e3
  • 8.07e3
72.97
  • 72.97
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.09e4
  • 1.09e4
  • 1.43e4
63.65
  • 63.65
  • 52.02
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.13e4
  • 1.13e4
62.00
  • 62.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.04
  • 58.04
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.38e4
  • 1.38e4
  • 1.78e4
53.89
  • 53.89
  • 40.25
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.51e4
  • 1.51e4
49.59
  • 49.59
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.76
  • 47.76
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.24
  • 45.24
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.74e4
  • 1.74e4
41.65
  • 41.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.17
  • 40.17
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.86e4
  • 1.86e4
37.63
  • 37.63
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.66
  • 29.66
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.69
  • 24.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000058381.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta8 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058381.

Cross-references

EnsemblENSDARG00000058381 (zgc:171775)
ZFINZDB-GENE-030131-4309 (zgc:171775)
EMBLCR352294
Uniprot/SPTREMBLE9QBD3, E9QBD3_DANRE, F1QHF2, F1QHF2_DANRE

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