D. rerio Gene: prpf40a - ENSDARG00000058467 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058467
Nameprpf40a
DescriptionPRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
OrganismDanio rerio (zebrafish)
Synonym(s)fb18h07, fe47a12, fnbp3, wu:fb18h07, wu:fe47a12
Orthologs(s)25 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
904
  • 904
  • 1.03e3
  • 2.65e3
  • 8.85e3
  • 8.88e3
96.98
  • 96.98
  • 96.55
  • 91.14
  • 70.38
  • 70.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.27e3
  • 1.27e3
  • 1.46e3
  • 1.95e3
  • 2.99e3
  • 3.48e3
  • 3.99e3
95.74
  • 95.74
  • 95.13
  • 93.47
  • 89.99
  • 88.36
  • 86.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.37e3
  • 1.37e3
95.43
  • 95.43
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.79e3
  • 1.79e3
94.00
  • 94.00
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.85e3
  • 1.85e3
  • 1.88e3
  • 2.83e3
  • 3.12e3
  • 3.49e3
  • 3.69e3
  • 4.27e3
  • 4.49e3
  • 6.52e3
  • 6.66e3
93.81
  • 93.81
  • 93.71
  • 90.54
  • 89.55
  • 88.33
  • 87.66
  • 85.71
  • 84.95
  • 78.16
  • 77.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
2.20e3
  • 2.20e3
  • 2.45e3
  • 2.70e3
  • 2.97e3
  • 3.07e3
  • 3.16e3
  • 3.29e3
  • 3.72e3
  • 3.80e3
  • 4.35e3
  • 5.61e3
  • 6.35e3
  • 6.69e3
  • 6.70e3
  • 1.39e4
  • 1.44e4
  • 1.48e4
  • 1.49e4
92.64
  • 92.64
  • 91.80
  • 90.97
  • 90.05
  • 89.73
  • 89.43
  • 89.00
  • 87.56
  • 87.29
  • 85.43
  • 81.22
  • 78.75
  • 77.62
  • 77.56
  • 53.30
  • 51.88
  • 50.61
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.59
  • 92.59
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.42e3
  • 2.42e3
91.89
  • 91.89
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.59e3
  • 2.59e3
91.33
  • 91.33
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.63e3
  • 2.63e3
  • 5.14e3
91.21
  • 91.21
  • 82.81
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.68e3
  • 2.68e3
  • 1.50e4
91.02
  • 91.02
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
90.15
  • 90.15
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.23e3
  • 3.23e3
89.19
  • 89.19
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.54
  • 88.54
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
  • 5.23e3
87.30
  • 87.30
  • 82.48
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.87e3
  • 3.87e3
87.04
  • 87.04
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.88e3
  • 3.88e3
87.00
  • 87.00
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.96e3
  • 3.96e3
86.75
  • 86.75
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.03e3
  • 4.03e3
  • 5.04e3
  • 6.00e3
  • 6.52e3
86.50
  • 86.50
  • 83.13
  • 79.91
  • 78.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
86.35
  • 86.35
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
86.26
  • 86.26
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.36e3
  • 4.36e3
85.41
  • 85.41
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.46e3
  • 4.46e3
85.08
  • 85.08
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.06
  • 85.06
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.84
  • 83.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.93e3
  • 4.93e3
83.50
  • 83.50
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.17
  • 83.17
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.03e3
  • 5.03e3
  • 8.41e3
83.17
  • 83.17
  • 71.86
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.08
  • 83.08
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.29
  • 79.29
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.54e3
  • 6.54e3
  • 7.31e3
  • 8.26e3
78.11
  • 78.11
  • 75.52
  • 72.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.67e3
  • 6.67e3
  • 7.04e3
77.68
  • 77.68
  • 76.42
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.31e3
  • 7.31e3
75.53
  • 75.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000058467.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058467.

Cross-references

EnsemblENSDARG00000058467 (prpf40a)
ZFINZDB-GENE-030131-274 (prpf40a)
EMBLBC049307, CR925815
Uniprot/SPTREMBLQ7ZUE4, Q7ZUE4_DANRE

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