Gene: caps2 - ENSDARG00000058486 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000058486
Name	caps2
Description	calcyphosine 2 [Source:ZFIN;Acc:ZDB-GENE-091204-449]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:ch73-86n2.3
Orthologs(s)	16 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.65 63.65	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.42e4 1.42e4	52.52 52.52	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.43e4 1.43e4	52.02 52.02	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.51e4 1.51e4	49.58 49.58	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.52e4 1.52e4	49.13 49.13	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.53e4 1.53e4	48.89 48.89	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.60e4 1.60e4	46.51 46.51	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.63e4 1.63e4	45.34 45.34	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	1.91e4 1.91e4	36.12 36.12	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.93e4 1.93e4	35.54 35.54	AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec UBERON:0004707pharyngula stage ZFS:0000037Larval:Day 5	2.00e4 2.00e4 2.08e4 2.15e4 2.24e4	33.12 33.12 30.20 27.85 25.14	AEIR AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.10e4 2.10e4	29.68 29.68	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.16e4 2.16e4	27.66 27.66	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	16 genes ENSG00000180881 CAPS2 ENSMUSG00000035694 Caps2 ENSPTRG00000005233 CAPS2 ENSGGOG00000013620 CAPS2 ENSMMUG00000012288 CAPS2 ENSRNOG00000026600 Caps2 ENSBTAG00000014859 CAPS2 ENSSSCG00000000517 CAPS2 ENSECAG00000011231 CAPS2 ENSOCUG00000003896 CAPS2 ENSCAFG00000000481 CAPS2 ENSFCAG00000014345 CAPS2 ENSMODG00000020442 CAPS2 ENSGALG00000010208 CAPS2 ENSACAG00000007716 CAPS2 ENSXETG00000032225 CAPS2	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000058486.

Cross-references

Ensembl	ENSDARG00000058486 (caps2)
ZFIN	ZDB-GENE-091204-449 (caps2)
Uniprot/SPTREMBL	E7F288, E7F288_DANRE