D. rerio Gene: popdc3 - ENSDARG00000058551 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058551
Namepopdc3
Descriptionpopeye domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040624-10]
OrganismDanio rerio (zebrafish)
Synonym(s)pop3
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.60e3
  • 3.60e3
  • 7.32e3
87.95
  • 87.95
  • 75.48
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.39
  • 83.39
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.99e3
  • 6.99e3
76.59
  • 76.59
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
  • 1.52e4
61.01
  • 61.01
  • 49.06
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.17e4
  • 1.17e4
  • 1.22e4
  • 1.31e4
  • 1.34e4
  • 1.58e4
60.87
  • 60.87
  • 59.31
  • 56.04
  • 55.24
  • 46.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.90
  • 58.90
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.42e4
  • 1.42e4
52.40
  • 52.40
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.41
  • 43.41
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.75
  • 42.75
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
  • 1.93e4
40.76
  • 40.76
  • 35.50
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.43
  • 37.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058551.

Cross-references

EnsemblENSDARG00000058551 (popdc3)
ZFINZDB-GENE-040624-10 (popdc3)
EMBLBX511173
Uniprot/SPTREMBLF1R6V1, F1R6V1_DANRE

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