D. rerio Gene: si:dkey-253d23.5 - ENSDARG00000058566 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058566
Namesi:dkey-253d23.5
Descriptionsi:dkey-253d23.5 [Source:ZFIN;Acc:ZDB-GENE-050208-729]
OrganismDanio rerio (zebrafish)
Synonym(s)fi42h12
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
5.43e3
  • 5.43e3
  • 6.12e3
  • 8.48e3
  • 9.53e3
  • 9.84e3
81.82
  • 81.82
  • 79.50
  • 71.59
  • 68.09
  • 67.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.56e3
  • 5.56e3
  • 7.18e3
  • 8.71e3
81.38
  • 81.38
  • 75.97
  • 70.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.52e3
  • 6.52e3
78.17
  • 78.17
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.07e3
  • 7.07e3
76.32
  • 76.32
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.27e3
  • 7.27e3
75.64
  • 75.64
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.76
  • 74.76
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.67e3
  • 7.67e3
74.31
  • 74.31
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
8.27e3
  • 8.27e3
  • 8.29e3
  • 8.64e3
  • 8.72e3
  • 9.32e3
  • 1.02e4
  • 1.05e4
  • 1.10e4
  • 1.11e4
  • 1.13e4
  • 1.13e4
  • 1.14e4
  • 1.14e4
  • 1.18e4
72.32
  • 72.32
  • 72.24
  • 71.05
  • 70.80
  • 68.79
  • 65.75
  • 64.81
  • 63.16
  • 62.86
  • 62.27
  • 62.00
  • 61.81
  • 61.69
  • 60.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.42e3
  • 8.42e3
  • 8.90e3
  • 9.23e3
  • 9.47e3
  • 1.06e4
  • 1.09e4
71.81
  • 71.81
  • 70.21
  • 69.10
  • 68.30
  • 64.62
  • 63.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.52e3
  • 8.52e3
71.47
  • 71.47
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
8.91e3
  • 8.91e3
  • 1.00e4
  • 1.00e4
  • 1.03e4
  • 1.03e4
  • 1.29e4
  • 1.33e4
  • 1.47e4
  • 1.61e4
  • 1.65e4
70.16
  • 70.16
  • 66.46
  • 66.43
  • 65.67
  • 65.63
  • 56.90
  • 55.31
  • 50.61
  • 46.00
  • 44.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.00e4
  • 1.00e4
66.43
  • 66.43
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
  • 1.24e4
66.35
  • 66.35
  • 58.35
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.26
  • 66.26
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.01e4
  • 1.01e4
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.01e4
  • 1.01e4
66.08
  • 66.08
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.76
  • 65.76
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.08e4
  • 1.08e4
  • 1.13e4
63.76
  • 63.76
  • 62.33
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.51
  • 63.51
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.86
  • 62.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.03
  • 61.03
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.30
  • 60.30
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
  • 2.25e4
58.57
  • 58.57
  • 24.54
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.40
  • 58.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.75
  • 56.75
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.38
  • 56.38
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.30e4
  • 1.30e4
  • 1.39e4
56.35
  • 56.35
  • 53.34
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.06
  • 56.06
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.26
  • 55.26
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.42e4
  • 1.42e4
  • 1.43e4
  • 1.63e4
52.31
  • 52.31
  • 52.05
  • 45.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.64
  • 49.64
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.82
  • 47.82
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.30
  • 46.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eumetazoa3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058566.

Cross-references

EnsemblENSDARG00000058566 (si:dkey-253d23.5)
ZFINZDB-GENE-050208-729 (si:dkey-253d23.5)
EMBLBX539307
Uniprot/SPTREMBLF1R6S7, F1R6S7_DANRE, Q1LWP0, Q1LWP0_DANRE

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