D. rerio Gene: sri - ENSDARG00000058593 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058593
Namesri
Descriptionsorcin [Source:ZFIN;Acc:ZDB-GENE-040426-1356]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:64070
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
647
  • 647
97.84
  • 97.84
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
653
  • 653
  • 2.86e3
97.82
  • 97.82
  • 90.42
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
789
  • 789
97.36
  • 97.36
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
866
  • 866
97.10
  • 97.10
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
912
  • 912
96.95
  • 96.95
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.51
  • 96.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.06e3
  • 1.06e3
96.46
  • 96.46
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.33e3
  • 1.33e3
  • 1.38e3
  • 1.83e3
  • 2.31e3
  • 2.39e3
  • 2.61e3
  • 2.99e3
  • 3.45e3
  • 4.91e3
  • 6.25e3
95.54
  • 95.54
  • 95.39
  • 93.87
  • 92.28
  • 91.99
  • 91.26
  • 89.98
  • 88.46
  • 83.56
  • 79.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
  • 2.37e3
94.33
  • 94.33
  • 92.08
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
  • 2.75e3
93.52
  • 93.52
  • 90.78
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.19
  • 93.19
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.05e3
  • 2.05e3
93.16
  • 93.16
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.05e3
  • 2.05e3
  • 2.18e3
  • 2.57e3
93.14
  • 93.14
  • 92.71
  • 91.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.29e3
  • 2.29e3
  • 2.75e3
92.34
  • 92.34
  • 90.79
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
2.42e3
  • 2.42e3
  • 2.45e3
  • 2.73e3
  • 2.78e3
  • 2.83e3
  • 3.56e3
  • 3.58e3
  • 3.71e3
  • 4.94e3
  • 5.11e3
  • 5.51e3
  • 5.79e3
  • 6.88e3
  • 7.33e3
91.89
  • 91.89
  • 91.80
  • 90.87
  • 90.70
  • 90.54
  • 88.08
  • 88.00
  • 87.57
  • 83.47
  • 82.90
  • 81.55
  • 80.62
  • 76.96
  • 75.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.90e3
  • 2.90e3
90.31
  • 90.31
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.92e3
  • 2.92e3
  • 3.04e3
  • 6.59e3
  • 7.42e3
90.24
  • 90.24
  • 89.81
  • 77.93
  • 75.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
2.97e3
  • 2.97e3
  • 4.08e3
  • 4.39e3
  • 5.29e3
  • 5.55e3
  • 7.45e3
90.06
  • 90.06
  • 86.33
  • 85.31
  • 82.30
  • 81.41
  • 75.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
3.10e3
  • 3.10e3
  • 4.00e3
  • 4.08e3
  • 4.38e3
  • 6.04e3
89.61
  • 89.61
  • 86.61
  • 86.35
  • 85.34
  • 79.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.45e3
  • 3.45e3
88.45
  • 88.45
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
87.33
  • 87.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.88e3
  • 3.88e3
87.00
  • 87.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.95
  • 86.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
83.24
  • 83.24
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.22e3
  • 5.22e3
82.53
  • 82.53
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.36e3
  • 5.36e3
82.06
  • 82.06
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.24
  • 80.24
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.72e3
  • 6.72e3
77.51
  • 77.51
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.18e3
  • 8.18e3
72.60
  • 72.60
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.16
  • 66.16
AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.20e4
  • 1.28e4
64.99
  • 64.99
  • 64.99
  • 59.98
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.20e4
61.75
  • 61.75
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000319mucus secreting cell
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.15e4
  • 1.15e4
  • 1.15e4
  • 1.15e4
61.53
  • 61.53
  • 61.53
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.20e4
  • 1.26e4
59.98
  • 59.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.27e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
57.47
  • 57.47
  • 57.47
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058593.

Cross-references

EnsemblENSDARG00000058593 (sri)
ZFINZDB-GENE-040426-1356 (sri)
EMBLCU466278
Uniprot/SPTREMBLF1R4I7, F1R4I7_DANRE

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