D. rerio Gene: desma - ENSDARG00000058656 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058656
Namedesma
Descriptiondesmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
OrganismDanio rerio (zebrafish)
Synonym(s)cb290, des, desm, fb59a12, wu:fb59a12, zgc:109859
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
261
  • 261
  • 1.52e3
  • 8.62e3
  • 1.42e4
99.13
  • 99.13
  • 94.90
  • 71.14
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
272
  • 272
  • 323
  • 520
  • 665
  • 1.40e3
  • 1.52e3
  • 1.92e3
  • 4.39e3
  • 8.00e3
  • 1.04e4
99.09
  • 99.09
  • 98.92
  • 98.26
  • 97.78
  • 95.30
  • 94.91
  • 93.56
  • 85.32
  • 73.20
  • 65.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
321
  • 321
98.93
  • 98.93
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
378
  • 378
98.74
  • 98.74
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
427
  • 427
98.57
  • 98.57
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
701
  • 701
97.66
  • 97.66
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
756
  • 756
  • 1.69e3
  • 2.25e3
97.47
  • 97.47
  • 94.34
  • 92.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
940
  • 940
  • 1.16e3
  • 1.19e3
  • 1.85e3
  • 2.10e3
  • 2.96e3
  • 4.27e3
  • 5.31e3
  • 8.47e3
  • 1.27e4
  • 1.36e4
  • 1.43e4
  • 1.45e4
  • 1.47e4
96.86
  • 96.86
  • 96.11
  • 96.02
  • 93.81
  • 92.98
  • 90.10
  • 85.71
  • 82.22
  • 71.63
  • 57.39
  • 54.48
  • 51.99
  • 51.42
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.22
  • 95.22
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.52e3
  • 1.52e3
  • 6.29e3
94.93
  • 94.93
  • 78.94
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.35e3
  • 2.35e3
92.13
  • 92.13
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
3.32e3
  • 3.32e3
  • 5.97e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 7.83e3
  • 9.13e3
  • 9.71e3
  • 1.08e4
  • 1.49e4
88.89
  • 88.89
  • 80.00
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 73.79
  • 69.43
  • 67.48
  • 63.87
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
  • 1.83e4
85.01
  • 85.01
  • 38.65
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.02e3
  • 5.02e3
83.19
  • 83.19
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.70
  • 81.70
AEIR
  • AEIR
CL:0000188cell of skeletal muscle
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
7.50e3
  • 7.50e3
74.88
  • 74.88
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
8.96e3
  • 8.96e3
  • 9.34e3
  • 9.71e3
  • 1.03e4
  • 1.19e4
  • 1.27e4
  • 1.29e4
  • 1.31e4
  • 1.31e4
70.00
  • 70.00
  • 68.73
  • 67.48
  • 65.49
  • 60.07
  • 57.47
  • 56.79
  • 56.24
  • 56.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.81e3
  • 9.81e3
  • 1.27e4
67.15
  • 67.15
  • 57.61
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.31e4
  • 1.32e4
66.65
  • 66.65
  • 66.65
  • 56.23
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.02e4
  • 1.02e4
  • 1.49e4
65.73
  • 65.73
  • 50.25
AEIR
  • AEIR
  • AEIR
UBERON:0003934mesenchyme pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.19e4
  • 1.19e4
  • 1.33e4
  • 1.34e4
59.99
  • 59.99
  • 55.53
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.21e4
  • 1.22e4
  • 1.22e4
  • 1.49e4
59.98
  • 59.98
  • 59.36
  • 59.08
  • 59.08
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.21e4
  • 1.21e4
  • 1.25e4
  • 1.35e4
  • 1.36e4
59.44
  • 59.44
  • 58.31
  • 54.73
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.37e4
  • 1.37e4
54.19
  • 54.19
AEIR
  • AEIR
UBERON:0002201vasculature of trunk
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011362cranial blood vasculature
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0014892skeletal muscle organ
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000746cardiac muscle cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.88
  • 49.88
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.61
  • 43.61
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.26
  • 41.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.70
  • 32.70
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata8 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058656.

Cross-references

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