D. rerio Gene: vax2 - ENSDARG00000058702 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058702
Namevax2
Descriptionventral anterior homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-030904-8]
OrganismDanio rerio (zebrafish)
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.49e3
  • 1.49e3
  • 7.47e3
95.00
  • 95.00
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
3.30e3
  • 3.30e3
  • 1.17e4
  • 1.74e4
88.94
  • 88.94
  • 60.84
  • 41.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000025Segmentation:10-13 somites
4.67e3
  • 4.67e3
84.37
  • 84.37
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 1.08e4
69.99
  • 69.99
  • 69.43
  • 67.48
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
1.10e4
  • 1.10e4
  • 1.49e4
  • 1.49e4
63.32
  • 63.32
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000027Segmentation:20-25 somites
1.36e4
  • 1.36e4
54.32
  • 54.32
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.37e4
  • 1.37e4
54.08
  • 54.08
AEIR
  • AEIR
ZFA:0005491optic furrow (Danio)
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005412optic fissure
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.56e4
  • 1.56e4
47.61
  • 47.61
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
  • 2.24e4
46.44
  • 46.44
  • 25.15
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.01
  • 42.01
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.75e4
  • 1.75e4
  • 1.75e4
  • 1.85e4
  • 1.88e4
  • 2.08e4
  • 2.20e4
41.49
  • 41.49
  • 41.29
  • 38.01
  • 37.16
  • 30.26
  • 26.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.77e4
  • 1.77e4
40.73
  • 40.73
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.29
  • 39.29
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.90e4
  • 1.90e4
  • 2.02e4
36.41
  • 36.41
  • 32.41
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000058702 (vax2)
ZFINZDB-GENE-030904-8 (vax2)
EMBLAY183363, BC163223, BC163225, CR457446
Uniprot/SPTREMBLB3DIR5, B3DIR5_DANRE
Uniprot/SWISSPROTQ801E1, VAX2_DANRE

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