D. rerio Gene: prdx1 - ENSDARG00000058734 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058734
Nameprdx1
Descriptionperoxiredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-050320-35]
OrganismDanio rerio (zebrafish)
Synonym(s)f1ra95, hm:zehl0637, zgc:110343

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
273
  • 273
99.09
  • 99.09
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
579
  • 579
98.06
  • 98.06
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
657
  • 657
  • 1.03e3
  • 1.06e3
  • 1.07e3
  • 2.08e3
97.80
  • 97.80
  • 96.55
  • 96.45
  • 96.43
  • 93.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
678
  • 678
97.73
  • 97.73
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
717
  • 717
97.60
  • 97.60
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.06e3
  • 1.06e3
  • 9.96e3
96.47
  • 96.47
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
95.81
  • 95.81
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.30
  • 95.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.17
  • 95.17
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.49e3
  • 1.49e3
95.01
  • 95.01
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.50e3
  • 1.50e3
  • 2.18e3
  • 2.20e3
  • 3.05e3
  • 3.24e3
  • 3.26e3
  • 3.98e3
  • 6.40e3
  • 7.25e3
  • 7.33e3
94.99
  • 94.99
  • 92.71
  • 92.63
  • 89.78
  • 89.16
  • 89.10
  • 86.68
  • 78.58
  • 75.73
  • 75.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.60e3
  • 1.60e3
  • 4.68e3
  • 5.79e3
  • 8.01e3
  • 1.00e4
  • 1.16e4
94.65
  • 94.65
  • 84.33
  • 80.61
  • 73.17
  • 66.37
  • 61.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
  • 4.62e3
94.57
  • 94.57
  • 84.53
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.51
  • 94.51
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.74e3
  • 1.74e3
  • 2.25e3
  • 2.26e3
  • 2.43e3
  • 2.50e3
  • 2.81e3
  • 3.23e3
  • 3.93e3
  • 4.93e3
  • 6.09e3
  • 6.33e3
  • 6.61e3
  • 6.99e3
  • 8.26e3
94.17
  • 94.17
  • 92.48
  • 92.44
  • 91.87
  • 91.63
  • 90.58
  • 89.20
  • 86.86
  • 83.51
  • 79.62
  • 78.81
  • 77.88
  • 76.60
  • 72.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.76e3
  • 1.76e3
94.13
  • 94.13
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.76e3
  • 1.76e3
94.11
  • 94.11
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
93.46
  • 93.46
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.15e3
  • 2.15e3
92.81
  • 92.81
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.23e3
  • 2.23e3
  • 2.30e3
  • 3.15e3
92.54
  • 92.54
  • 92.29
  • 89.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.28
  • 92.28
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.34e3
  • 2.34e3
92.18
  • 92.18
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
  • 3.20e3
91.05
  • 91.05
  • 89.27
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
2.84e3
  • 2.84e3
  • 1.28e4
90.51
  • 90.51
  • 57.13
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.88e3
  • 2.88e3
  • 3.52e3
90.36
  • 90.36
  • 88.23
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.25
  • 90.25
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.63e3
  • 3.63e3
  • 1.06e4
87.84
  • 87.84
  • 64.50
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.11e3
  • 4.11e3
86.25
  • 86.25
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.42e3
  • 4.42e3
85.20
  • 85.20
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.59e3
  • 6.59e3
77.93
  • 77.93
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.06e3
  • 7.06e3
76.35
  • 76.35
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.64e3
  • 8.64e3
  • 9.54e3
  • 1.02e4
71.07
  • 71.07
  • 68.04
  • 65.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.12e4
  • 1.16e4
  • 1.17e4
  • 1.22e4
  • 1.22e4
  • 1.31e4
  • 1.33e4
64.99
  • 64.99
  • 62.49
  • 61.10
  • 60.70
  • 59.08
  • 59.08
  • 56.24
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.14e4
  • 1.14e4
  • 1.23e4
61.75
  • 61.75
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.19e4
  • 1.19e4
  • 1.22e4
  • 1.24e4
  • 1.49e4
59.99
  • 59.99
  • 59.08
  • 58.32
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0010202lateral line
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL954171, CU467854
EnsemblENSDARG00000058734 (prdx1)
Uniprot/SPTREMBLA2AWE1, A2AWE1_DANRE
ZFINZDB-GENE-050320-35 (prdx1)

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