D. rerio Gene: rab25a - ENSDARG00000058800 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058800
Namerab25a
DescriptionRAB25, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-041212-69]
OrganismDanio rerio (zebrafish)
Synonym(s)rab25, si:dkeyp-84f11.7, zgc:101648
Orthologs(s)16 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
2.40e3
  • 2.40e3
  • 5.53e3
  • 6.57e3
  • 7.37e3
  • 8.59e3
  • 8.71e3
91.97
  • 91.97
  • 81.49
  • 77.99
  • 75.31
  • 71.22
  • 70.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.36
  • 89.36
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
4.27e3
  • 4.27e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.43e3
  • 5.60e3
  • 5.81e3
  • 5.98e3
  • 6.15e3
  • 6.22e3
  • 6.22e3
  • 7.03e3
  • 7.78e3
  • 7.97e3
  • 7.97e3
  • 8.20e3
  • 8.58e3
  • 8.78e3
  • 1.09e4
  • 1.26e4
  • 1.31e4
  • 1.31e4
  • 1.32e4
  • 1.32e4
  • 1.38e4
  • 1.39e4
  • 1.40e4
  • 1.42e4
85.71
  • 85.71
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.81
  • 81.24
  • 80.55
  • 79.99
  • 79.40
  • 79.16
  • 79.16
  • 76.46
  • 73.95
  • 73.32
  • 73.32
  • 72.54
  • 71.28
  • 70.61
  • 63.51
  • 57.82
  • 56.21
  • 56.05
  • 55.95
  • 55.89
  • 53.71
  • 53.55
  • 53.13
  • 52.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
5.34e3
  • 5.34e3
  • 6.01e3
  • 7.22e3
  • 9.78e3
  • 1.08e4
  • 1.08e4
  • 1.11e4
  • 1.21e4
  • 1.49e4
  • 1.70e4
82.14
  • 82.14
  • 79.89
  • 75.81
  • 67.26
  • 63.98
  • 63.93
  • 62.71
  • 59.52
  • 50.21
  • 43.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.64e3
  • 6.64e3
  • 1.00e4
77.78
  • 77.78
  • 66.50
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.92e3
  • 6.92e3
  • 1.57e4
76.84
  • 76.84
  • 47.60
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.60e3
  • 8.60e3
71.19
  • 71.19
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
  • 2.31e4
67.99
  • 67.99
  • 22.78
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
9.76e3
  • 9.76e3
  • 1.14e4
  • 1.42e4
67.31
  • 67.31
  • 61.98
  • 52.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.04
  • 66.04
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.16e4
  • 1.16e4
  • 1.40e4
  • 1.69e4
61.01
  • 61.01
  • 52.98
  • 43.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.08
  • 58.08
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.41e4
  • 1.41e4
52.67
  • 52.67
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.46
  • 43.46
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.71e4
  • 1.71e4
42.74
  • 42.74
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.89
  • 35.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058800.

Cross-references

EnsemblENSDARG00000058800 (rab25a)
ZFINZDB-GENE-041212-69 (rab25a)
EMBLBX890617, FP085396
Uniprot/SPTREMBLQ1LVA5, Q1LVA5_DANRE

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