D. rerio Gene: rbm38 - ENSDARG00000058818 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058818
Namerbm38
DescriptionRNA binding motif protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-5923]
OrganismDanio rerio (zebrafish)
Synonym(s)fi25e12, rnpc1, wu:fi25e12, yf-55, zgc:92336
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
983
  • 983
  • 3.37e3
96.71
  • 96.71
  • 88.71
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.42e3
  • 1.42e3
  • 2.10e3
95.24
  • 95.24
  • 92.96
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.14e3
  • 2.14e3
92.83
  • 92.83
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.42
  • 87.42
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.82e3
  • 3.82e3
  • 1.50e4
87.22
  • 87.22
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
83.88
  • 83.88
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.89e3
  • 4.89e3
83.62
  • 83.62
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.27e3
  • 5.27e3
82.35
  • 82.35
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.09
  • 82.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
81.49
  • 81.49
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
81.48
  • 81.48
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.75e3
  • 5.75e3
80.75
  • 80.75
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
5.76e3
  • 5.76e3
  • 6.39e3
  • 7.93e3
  • 9.57e3
  • 1.01e4
80.73
  • 80.73
  • 78.62
  • 73.45
  • 67.94
  • 66.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
79.26
  • 79.26
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.32e3
  • 6.32e3
78.83
  • 78.83
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.35e3
  • 7.35e3
  • 7.61e3
75.41
  • 75.41
  • 74.51
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.19e3
  • 8.19e3
72.58
  • 72.58
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
  • 1.00e4
71.76
  • 71.76
  • 66.44
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.36
  • 67.36
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.76e3
  • 9.76e3
  • 1.30e4
67.33
  • 67.33
  • 56.63
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.61
  • 59.61
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.88
  • 57.88
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.40e4
  • 1.40e4
53.04
  • 53.04
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.25
  • 52.25
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.72
  • 48.72
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.30
  • 44.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000058818 (rbm38)
ZFINZDB-GENE-030131-5923 (rbm38)
EMBLBC171537, CR450824
Uniprot/SPTREMBLB7ZVC7, B7ZVC7_DANRE, E9QB16, E9QB16_DANRE, F1Q758, F1Q758_DANRE

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