D. rerio Gene: ptpdc1b - ENSDARG00000058873 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058873
Nameptpdc1b
Descriptionprotein tyrosine phosphatase domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-090312-138]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch73-142c19.2
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.53e3
  • 1.53e3
  • 4.30e3
  • 1.49e4
  • 1.61e4
94.88
  • 94.88
  • 85.61
  • 50.05
  • 46.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.56e3
  • 2.56e3
  • 8.53e3
91.42
  • 91.42
  • 71.43
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
3.40e3
  • 3.40e3
  • 5.14e3
  • 5.92e3
  • 6.00e3
  • 6.13e3
  • 6.30e3
  • 6.34e3
  • 6.88e3
  • 7.24e3
  • 7.29e3
  • 7.53e3
  • 9.14e3
  • 9.72e3
  • 1.18e4
  • 1.49e4
88.61
  • 88.61
  • 82.78
  • 80.17
  • 79.91
  • 79.48
  • 78.92
  • 78.78
  • 76.96
  • 75.75
  • 75.58
  • 74.78
  • 69.40
  • 67.44
  • 60.57
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
7.77e3
  • 7.77e3
  • 1.04e4
  • 1.36e4
  • 1.38e4
  • 1.59e4
  • 1.70e4
  • 1.75e4
  • 1.78e4
  • 2.00e4
73.98
  • 73.98
  • 65.15
  • 54.41
  • 53.88
  • 46.82
  • 42.96
  • 41.29
  • 40.27
  • 32.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.03e3
  • 9.03e3
69.76
  • 69.76
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.71e3
  • 9.71e3
67.50
  • 67.50
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.76e3
  • 9.76e3
67.33
  • 67.33
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.00e4
  • 1.00e4
66.45
  • 66.45
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.55
  • 64.55
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.19e4
  • 1.19e4
  • 1.29e4
  • 1.35e4
60.16
  • 60.16
  • 56.79
  • 54.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.39
  • 57.39
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.25
  • 57.25
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.29e4
  • 1.29e4
  • 1.30e4
  • 1.43e4
  • 1.72e4
  • 1.87e4
56.84
  • 56.84
  • 56.37
  • 52.11
  • 42.57
  • 37.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.71
  • 55.71
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.62e4
55.28
  • 55.28
  • 45.76
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.36e4
  • 1.36e4
54.33
  • 54.33
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.38e4
  • 1.38e4
  • 1.42e4
  • 1.62e4
  • 1.68e4
  • 1.69e4
53.71
  • 53.71
  • 52.45
  • 45.60
  • 43.69
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.23
  • 52.23
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.46e4
  • 1.46e4
  • 1.54e4
51.21
  • 51.21
  • 48.45
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.10
  • 49.10
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.30
  • 48.30
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.13
  • 43.13
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.41
  • 39.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.82
  • 38.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000058873.

Cross-references

EnsemblENSDARG00000058873 (ptpdc1b)
ZFINZDB-GENE-090312-138 (ptpdc1b)
EMBLCU571072
Uniprot/SPTREMBLE7FBM8, E7FBM8_DANRE

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