D. rerio Gene: cldnj - ENSDARG00000058880 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058880
Namecldnj
Descriptionclaudin j [Source:ZFIN;Acc:ZDB-GENE-010328-10]
OrganismDanio rerio (zebrafish)
Synonym(s)fc30g01, wu:fc30g01

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003051ear vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.27e4
  • 1.34e4
64.28
  • 64.28
  • 57.47
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
  • 1.42e4
54.97
  • 54.97
  • 52.47
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.42e4
  • 1.42e4
  • 1.53e4
  • 1.70e4
  • 2.01e4
  • 2.18e4
52.46
  • 52.46
  • 48.72
  • 43.18
  • 32.61
  • 26.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.65e4
  • 1.65e4
  • 1.72e4
44.65
  • 44.65
  • 42.47
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.82e4
  • 1.82e4
39.01
  • 39.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.02
  • 35.02
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.53
  • 26.53
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.26
  • 23.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000058880 (cldnj)
ZFINZDB-GENE-010328-10 (cldnj)
EMBLCR382327
Uniprot/SPTREMBLF1QVR6, F1QVR6_DANRE

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