D. rerio Gene: pou1f1 - ENSDARG00000058924 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058924
Namepou1f1
DescriptionPOU class 1 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040630-7]
OrganismDanio rerio (zebrafish)
Synonym(s)pit-1, pit1
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.08e4
79.99
  • 79.99
  • 69.99
  • 69.99
  • 69.99
  • 66.66
  • 66.65
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 9.96e3
75.00
  • 75.00
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0009122adenohypophyseal placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
7.47e3
  • 7.47e3
  • 8.96e3
  • 1.07e4
  • 1.12e4
75.00
  • 75.00
  • 70.00
  • 64.28
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000038Larval:Day 6
9.19e3
  • 9.19e3
  • 9.19e3
  • 9.96e3
  • 9.96e3
  • 1.07e4
  • 1.12e4
  • 1.16e4
  • 1.19e4
  • 1.49e4
69.22
  • 69.22
  • 69.22
  • 66.66
  • 66.66
  • 64.27
  • 62.50
  • 61.10
  • 59.99
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.02
  • 50.02
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.74e4
  • 1.74e4
41.58
  • 41.58
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.91e4
  • 1.91e4
36.04
  • 36.04
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
1.99e4
  • 1.99e4
33.52
  • 33.52
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.34e4
  • 2.34e4
21.75
  • 21.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000058924 (pou1f1)
ZFINZDB-GENE-040630-7 (pou1f1)
EMBLAY421970, BC162244, CR361551
Uniprot/SPTREMBLQ6TGI4, Q6TGI4_DANRE

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