D. rerio Gene: si:dkey-288i20.1 - ENSDARG00000058945 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058945
Namesi:dkey-288i20.1
Descriptionsi:dkey-288i20.1 [Source:ZFIN;Acc:ZDB-GENE-110407-17]
OrganismDanio rerio (zebrafish)
Orthologs(s)54 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
615
  • 615
97.94
  • 97.94
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
95.04
  • 95.04
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
94.68
  • 94.68
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
94.44
  • 94.44
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.45
  • 57.45
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.25
  • 55.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.55
  • 46.55
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.53
  • 46.53
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.28
  • 46.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species50 genesCompare expression
Bilateria19 species54 genesCompare expression

Orthology information comes from OMA : ENSDARG00000058945.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi2 genesCompare expression
Chordata8 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058945.

Cross-references

EnsemblENSDARG00000058945 (si:dkey-288i20.1)
ZFINZDB-GENE-110407-17 (si:dkey-288i20.1)
EMBLCU467885
Uniprot/SPTREMBLF6NRN3, F6NRN3_DANRE

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