D. rerio Gene: TRIM35 (1 to many) - ENSDARG00000058958 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000058958
NameTRIM35 (1 to many)
Descriptionsi:ch73-106l15.3 [Source:ZFIN;Acc:ZDB-GENE-131119-18]
OrganismDanio rerio (zebrafish)
Synonym(s)hls5, kiaa1098, mair
Orthologs(s)2 orthologs
Paralog(s)28 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.70e3
  • 8.70e3
70.88
  • 70.88
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
69.31
  • 69.31
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.02e4
  • 1.02e4
  • 1.02e4
  • 1.15e4
  • 1.30e4
  • 1.62e4
65.99
  • 65.99
  • 65.74
  • 61.37
  • 56.44
  • 45.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.07e4
  • 1.07e4
  • 1.40e4
  • 1.52e4
64.21
  • 64.21
  • 53.03
  • 48.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.77
  • 61.77
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.08
  • 60.08
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.01
  • 57.01
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.33e4
  • 1.33e4
55.34
  • 55.34
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.74
  • 54.74
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.82
  • 50.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.01
  • 50.01
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.52
  • 49.52
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.79
  • 48.79
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.44
  • 48.44
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
1.55e4
  • 1.55e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.83e4
  • 1.83e4
48.15
  • 48.15
  • 40.56
  • 40.38
  • 40.18
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.57e4
  • 1.57e4
47.33
  • 47.33
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.58e4
  • 1.58e4
  • 1.86e4
  • 1.92e4
  • 2.27e4
47.04
  • 47.04
  • 37.74
  • 35.81
  • 24.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
  • 1.75e4
44.98
  • 44.98
  • 41.48
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.78
  • 42.78
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.22
  • 41.22
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.78e4
  • 1.78e4
  • 1.90e4
40.35
  • 40.35
  • 36.41
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
  • 2.37e4
39.30
  • 39.30
  • 20.56
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.86e4
  • 1.86e4
  • 1.92e4
37.77
  • 37.77
  • 35.68
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.41
  • 33.41
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000058958.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi25 genesCompare expression
Clupeocephala26 genesCompare expression
Euteleostomi28 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000058958.

Cross-references

EnsemblENSDARG00000058958 (TRIM35 (1 to many))
HGNCHGNC:16285 (TRIM35 (1 to many))
ZFINZDB-GENE-131119-18 (si:ch73-106l15.3)
EMBLFP340265
Uniprot/SPTREMBLF1QWI8, F1QWI8_DANRE

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