Gene: cntnap2a - ENSDARG00000058969 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000058969
Name	cntnap2a
Description	contactin associated protein-like 2a [Source:ZFIN;Acc:ZDB-GENE-120328-3]
Organism	Danio rerio (zebrafish)
Synonym(s)	caspr2a, zmp:0000000672
Orthologs(s)	13 orthologs
Paralog(s)	6 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.90e3 1.90e3	93.65 93.65	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	4.46e3 4.46e3 7.43e3	85.08 85.08 75.11	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	4.65e3 4.65e3	84.44 84.44	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	5.97e3 5.97e3 1.00e4 1.72e4 1.76e4 1.96e4	80.00 80.00 66.35 42.53 41.22 34.21	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	7.76e3 7.76e3 1.26e4	74.00 74.00 57.86	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	9.67e3 9.67e3	67.62 67.62	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.15e4 1.15e4	61.45 61.45	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.29e4 1.29e4	56.87 56.87	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.40e4 1.40e4	53.17 53.17	AEIR AEIR
UBERON:2001314	posterior lateral line ganglion	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:2001391	anterior lateral line ganglion	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.53e4 1.53e4	48.83 48.83	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.60e4 1.60e4	46.28 46.28	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	1.63e4 1.63e4 1.66e4	45.57 45.57 44.58	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	44.16 44.16	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	1.74e4 1.74e4	41.62 41.62	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.81e4 1.81e4	39.26 39.26	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.84e4 1.84e4	38.49 38.49	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.88e4 1.88e4	36.89 36.89	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.93e4 1.93e4	35.41 35.41	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.95e4 1.95e4	34.65 34.65	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	6 species Homo sapiens (human) Mus musculus (mouse) Macaca mulatta (macaque) Equus caballus (horse) Erinaceus europaeus (hedgehog) Anolis carolinensis (green anole)	6 genes ENSG00000174469 CNTNAP2 ENSMUSG00000039419 Cntnap2 ENSMMUG00000015772 ENSECAG00000008838 CNTNAP2 ENSEEUG00000004331 CNTNAP2 ENSACAG00000013647 CNTNAP2	Compare expression	[+]
Bilateria	13 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Macaca mulatta (macaque) Equus caballus (horse) Erinaceus europaeus (hedgehog) Anolis carolinensis (green anole) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	13 genes ENSG00000174469 CNTNAP2 ENSMUSG00000039419 Cntnap2 FBgn0013997 Nrx-IV WBGene00003772 nlr-1 ENSMMUG00000015772 ENSECAG00000008838 CNTNAP2 ENSEEUG00000004331 CNTNAP2 ENSACAG00000013647 CNTNAP2 FBgn0101797 GF24804 FBgn0135182 GI12425 FBgn0186048 GD14363 FBgn0199567 GJ12321 FBgn0239131 GE21889	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000058969.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	5 genes ENSDARG00000067824 CNTNAP3 ENSDARG00000073802 cntnap5l ENSDARG00000073920 cntnap5a ENSDARG00000074558 cntnap2b ENSDARG00000075189 cntnap5b	Compare expression	[+]
Bilateria	6 genes ENSDARG00000067824 CNTNAP3 ENSDARG00000073802 cntnap5l ENSDARG00000073920 cntnap5a ENSDARG00000074524 cntnap1 ENSDARG00000074558 cntnap2b ENSDARG00000075189 cntnap5b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000058969.

Cross-references

Ensembl	ENSDARG00000058969 (cntnap2a)
ZFIN	ZDB-GENE-120328-3 (cntnap2a)
Uniprot/SPTREMBL	X1WDP2, X1WDP2_DANRE, X1WFA3, X1WFA3_DANRE