D. rerio Gene: mmp28 - ENSDARG00000059029 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059029
Namemmp28
Descriptionmatrix metallopeptidase 28 [Source:ZFIN;Acc:ZDB-GENE-100226-1]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch1073-408o3.1
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
  • 1.17e4
  • 1.27e4
  • 1.28e4
  • 1.76e4
64.33
  • 64.33
  • 60.77
  • 57.62
  • 57.18
  • 40.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.13e4
  • 1.13e4
  • 1.44e4
62.30
  • 62.30
  • 51.81
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.20e4
  • 1.20e4
59.97
  • 59.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.47
  • 59.47
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.68
  • 53.68
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.69
  • 52.69
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
  • 2.13e4
46.99
  • 46.99
  • 28.85
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.85
  • 46.85
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.04
  • 43.04
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
  • 1.80e4
40.57
  • 40.57
  • 39.85
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.61
  • 38.61
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.19
  • 37.19
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.10
  • 32.10
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.86
  • 28.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000059029 (mmp28)
ZFINZDB-GENE-100226-1 (mmp28)
EMBLCU633910
Uniprot/SPTREMBLA0A0J9YJ14, A0A0J9YJ14_DANRE, E7F9I3, E7F9I3_DANRE, X1WBS7, X1WBS7_DANRE

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