D. rerio Gene: irbp - ENSDARG00000059163 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059163
Nameirbp
Descriptioninterphotoreceptor retinoid-binding protein [Source:ZFIN;Acc:ZDB-GENE-990415-132]
OrganismDanio rerio (zebrafish)
Synonym(s)irbp gene 2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
372
  • 372
  • 472
98.76
  • 98.76
  • 98.42
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
518
  • 518
  • 767
  • 7.47e3
  • 8.96e3
  • 1.50e4
98.27
  • 98.27
  • 97.43
  • 75.00
  • 69.99
  • 49.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
755
  • 755
  • 1.74e4
  • 2.05e4
  • 2.24e4
  • 2.28e4
97.48
  • 97.48
  • 41.73
  • 31.19
  • 24.92
  • 23.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
764
  • 764
  • 1.89e3
  • 2.13e3
  • 3.24e3
  • 1.34e4
  • 1.47e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
97.44
  • 97.44
  • 93.66
  • 92.88
  • 89.17
  • 55.05
  • 50.90
  • 40.18
  • 39.77
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.64e3
  • 1.64e3
  • 3.63e3
  • 8.38e3
94.51
  • 94.51
  • 87.84
  • 71.94
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000287eye photoreceptor cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
4.98e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
83.34
  • 83.34
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
4.98e3
  • 4.98e3
  • 4.98e3
  • 7.47e3
83.34
  • 83.34
  • 83.34
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0015238pineal complex
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
4.98e3
  • 4.98e3
  • 1.12e4
83.34
  • 83.34
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.17
  • 62.17
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.07
  • 48.07
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.62e4
  • 1.62e4
  • 1.62e4
45.89
  • 45.89
  • 45.67
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.62e4
  • 1.62e4
45.66
  • 45.66
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.67e4
  • 1.67e4
44.25
  • 44.25
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.97
  • 40.97
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.51
  • 39.51
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.58
  • 38.58
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.36
  • 34.36
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.38
  • 23.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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