Gene: hephl1a - ENSDARG00000059231 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000059231
Name	hephl1a
Description	hephaestin-like 1a [Source:ZFIN;Acc:ZDB-GENE-070801-4]
Organism	Danio rerio (zebrafish)
Synonym(s)	hephl1, zgc:165649
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	2.20e3 2.20e3	92.65 92.65	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	3.52e3 3.52e3 1.10e4	88.21 88.21 63.08	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	3.67e3 3.67e3	87.71 87.71	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	3.71e3 3.71e3	87.57 87.57	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	4.00e3 4.00e3	86.62 86.62	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	5.03e3 5.03e3	83.15 83.15	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	5.48e3 5.48e3	81.64 81.64	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	5.64e3 5.64e3	81.13 81.13	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	5.68e3 5.68e3	80.97 80.97	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	6.21e3 6.21e3	79.19 79.19	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	6.48e3 6.48e3	78.30 78.30	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	6.75e3 6.75e3	77.41 77.41	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.65e3 7.65e3	74.38 74.38	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	8.47e3 8.47e3 9.73e3 1.04e4 1.59e4 1.87e4	71.65 71.65 67.42 65.02 46.66 37.44	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	8.54e3 8.54e3	71.40 71.40	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.57e3 8.57e3	71.30 71.30	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.04e4 1.04e4	65.23 65.23	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.82 60.82	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.35e4 1.35e4 2.01e4	54.66 54.66 32.77	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.40e4 1.40e4	53.28 53.28	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.78e4 1.78e4	40.45 40.45	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Neopterygii	1 gene ENSDARG00000026403 hephl1b	Compare expression	[+]
Chordata	2 genes ENSDARG00000010312 cp ENSDARG00000026403 hephl1b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000059231.

Cross-references

Ensembl	ENSDARG00000059231 (hephl1a)
ZFIN	ZDB-GENE-070801-4 (hephl1a)
EMBL	CABZ01061641, CABZ01061642, CABZ01111132, CU896646
Uniprot/SPTREMBL	F1QVH8, F1QVH8_DANRE, X1WD76, X1WD76_DANRE