D. rerio Gene: hnrnpd - ENSDARG00000059246 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059246
Namehnrnpd
Descriptionheterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fa28b06, zgc:162951
Orthologs(s)25 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
499
  • 499
98.33
  • 98.33
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
577
  • 577
  • 591
  • 607
  • 848
  • 1.17e3
  • 1.48e3
  • 2.30e3
  • 2.35e3
  • 2.41e3
  • 2.60e3
  • 2.97e3
  • 3.62e3
  • 4.10e3
  • 1.04e4
  • 1.37e4
  • 1.38e4
98.07
  • 98.07
  • 98.02
  • 97.97
  • 97.16
  • 96.09
  • 95.05
  • 92.29
  • 92.13
  • 91.94
  • 91.30
  • 90.05
  • 87.88
  • 86.26
  • 65.30
  • 54.25
  • 53.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
728
  • 728
  • 795
  • 823
  • 995
  • 1.18e3
  • 1.19e3
97.56
  • 97.56
  • 97.34
  • 97.25
  • 96.67
  • 96.05
  • 96.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
858
  • 858
97.13
  • 97.13
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
868
  • 868
  • 2.53e3
  • 2.85e3
  • 3.15e3
97.10
  • 97.10
  • 91.52
  • 90.45
  • 89.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
892
  • 892
  • 1.28e3
97.02
  • 97.02
  • 95.73
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
974
  • 974
  • 1.79e3
96.74
  • 96.74
  • 94.02
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
1.02e3
  • 1.02e3
  • 1.15e3
  • 1.40e3
  • 1.57e3
  • 1.74e3
  • 1.84e3
  • 2.19e3
  • 2.28e3
  • 2.37e3
  • 2.60e3
96.60
  • 96.60
  • 96.16
  • 95.32
  • 94.76
  • 94.17
  • 93.84
  • 92.68
  • 92.36
  • 92.05
  • 91.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.15e3
  • 1.15e3
96.16
  • 96.16
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.20e3
  • 1.20e3
  • 1.79e3
95.97
  • 95.97
  • 93.99
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.61
  • 95.61
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
95.36
  • 95.36
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.53e3
  • 1.53e3
  • 2.15e3
  • 5.75e3
  • 6.82e3
  • 7.02e3
94.89
  • 94.89
  • 92.79
  • 80.75
  • 77.18
  • 76.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.86
  • 94.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.86
  • 94.86
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.85
  • 94.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
94.62
  • 94.62
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.67e3
  • 1.67e3
  • 1.50e4
94.42
  • 94.42
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.82e3
  • 1.82e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.83e3
  • 1.83e3
93.89
  • 93.89
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.53
  • 93.53
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.97e3
  • 1.97e3
  • 2.68e3
  • 3.09e3
93.41
  • 93.41
  • 91.02
  • 89.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
  • 3.75e3
93.09
  • 93.09
  • 87.43
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.45
  • 92.45
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.52e3
  • 2.52e3
91.55
  • 91.55
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.56e3
  • 2.56e3
91.42
  • 91.42
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.71
  • 90.71
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.87e3
  • 2.87e3
90.41
  • 90.41
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.01e3
  • 3.01e3
89.92
  • 89.92
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.86e3
  • 3.86e3
87.08
  • 87.08
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.81e3
  • 6.81e3
77.20
  • 77.20
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.58e3
  • 7.58e3
74.62
  • 74.62
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.85e3
  • 7.85e3
73.73
  • 73.73
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000059246.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000059246.

Cross-references

EnsemblENSDARG00000059246 (hnrnpd)
ZFINZDB-GENE-070424-97 (hnrnpd)
EMBLCR847788
Uniprot/SPTREMBLF1Q8A5, F1Q8A5_DANRE

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