D. rerio Gene: spcs1 - ENSDARG00000059298 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059298
Namespcs1
Descriptionsignal peptidase complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050809-130]
OrganismDanio rerio (zebrafish)
Synonym(s)fa97f07, wu:fa97f07, zgc:110014
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
528
  • 528
98.24
  • 98.24
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
904
  • 904
  • 1.29e3
  • 1.35e3
  • 1.69e3
  • 1.70e3
  • 1.87e3
  • 1.96e3
  • 1.98e3
  • 2.19e3
  • 3.15e3
96.98
  • 96.98
  • 95.69
  • 95.48
  • 94.36
  • 94.29
  • 93.75
  • 93.45
  • 93.38
  • 92.67
  • 89.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
990
  • 990
  • 3.31e3
96.69
  • 96.69
  • 88.93
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
  • 2.66e3
96.62
  • 96.62
  • 91.10
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.54
  • 96.54
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.32e3
  • 1.32e3
95.59
  • 95.59
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.38e3
  • 1.38e3
  • 2.44e3
95.39
  • 95.39
  • 91.83
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.40e3
  • 1.40e3
  • 2.17e3
  • 2.73e3
95.33
  • 95.33
  • 92.74
  • 90.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.41e3
  • 1.41e3
  • 2.76e3
  • 4.99e3
  • 5.41e3
  • 6.93e3
  • 8.00e3
95.27
  • 95.27
  • 90.78
  • 83.30
  • 81.88
  • 76.80
  • 73.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.24
  • 95.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.55e3
  • 1.55e3
94.83
  • 94.83
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.55e3
  • 1.55e3
94.82
  • 94.82
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.63e3
  • 1.63e3
94.55
  • 94.55
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
94.33
  • 94.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.74e3
  • 1.74e3
94.16
  • 94.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.78e3
  • 1.78e3
94.04
  • 94.04
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.87e3
  • 1.87e3
93.73
  • 93.73
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.02e3
  • 2.02e3
93.22
  • 93.22
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.18
  • 93.18
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
2.11e3
  • 2.11e3
  • 2.83e3
  • 3.23e3
  • 8.27e3
92.93
  • 92.93
  • 90.53
  • 89.18
  • 72.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
2.33e3
  • 2.33e3
  • 2.33e3
  • 2.38e3
  • 2.39e3
  • 2.57e3
  • 2.93e3
  • 2.98e3
  • 3.32e3
  • 4.32e3
  • 4.62e3
  • 5.09e3
  • 5.40e3
  • 8.25e3
  • 1.26e4
92.20
  • 92.20
  • 92.19
  • 92.02
  • 92.01
  • 91.39
  • 90.18
  • 90.03
  • 88.90
  • 85.54
  • 84.54
  • 82.97
  • 81.91
  • 72.38
  • 57.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.35e3
  • 2.35e3
  • 2.48e3
92.13
  • 92.13
  • 91.70
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.71
  • 90.71
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.05e3
  • 3.05e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.68e3
  • 3.68e3
87.67
  • 87.67
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.88e3
  • 3.88e3
87.01
  • 87.01
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.88e3
  • 3.88e3
87.01
  • 87.01
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.68
  • 81.68
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
72.15
  • 72.15
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
8.57e3
  • 8.57e3
  • 1.05e4
  • 1.08e4
  • 1.23e4
71.29
  • 71.29
  • 64.86
  • 63.92
  • 58.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.99e3
  • 8.99e3
69.89
  • 69.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi13 species15 genesCompare expression
Bilateria20 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000059298.

Cross-references

EnsemblENSDARG00000059298 (spcs1)
ZFINZDB-GENE-050809-130 (spcs1)
EMBLBC099997, CR450797
Uniprot/SPTREMBLQ499B2, Q499B2_DANRE

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