D. rerio Gene: si:ch211-285f17.1 - ENSDARG00000059333 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059333
Namesi:ch211-285f17.1
Descriptionsi:ch211-285f17.1 [Source:ZFIN;Acc:ZDB-GENE-000607-77]
OrganismDanio rerio (zebrafish)
Synonym(s)fj77d08, id:ibd5057, wu:fj77d08
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.32e3
  • 3.32e3
88.90
  • 88.90
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
3.72e3
  • 3.72e3
  • 5.36e3
  • 1.08e4
  • 1.14e4
  • 1.22e4
  • 1.29e4
87.53
  • 87.53
  • 82.05
  • 63.93
  • 61.80
  • 59.27
  • 56.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.88e3
  • 3.88e3
  • 6.17e3
87.00
  • 87.00
  • 79.33
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
4.01e3
  • 4.01e3
  • 5.88e3
  • 7.01e3
  • 7.19e3
  • 7.94e3
  • 1.16e4
  • 1.33e4
  • 1.42e4
  • 1.55e4
86.58
  • 86.58
  • 80.30
  • 76.54
  • 75.92
  • 73.42
  • 61.07
  • 55.31
  • 52.58
  • 48.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
85.50
  • 85.50
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.18
  • 80.18
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.06e3
  • 6.06e3
  • 1.10e4
79.71
  • 79.71
  • 63.18
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.07e3
  • 6.07e3
79.69
  • 79.69
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.32e3
  • 6.32e3
78.85
  • 78.85
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
6.47e3
  • 6.47e3
  • 1.14e4
  • 1.48e4
78.34
  • 78.34
  • 61.88
  • 50.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.44
  • 77.44
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
73.21
  • 73.21
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.17e3
  • 9.17e3
69.29
  • 69.29
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.21e3
  • 9.21e3
69.16
  • 69.16
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.34e3
  • 9.34e3
68.71
  • 68.71
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.43
  • 67.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.20
  • 66.20
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.02e4
  • 1.02e4
  • 1.43e4
  • 1.62e4
65.80
  • 65.80
  • 52.10
  • 45.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
64.34
  • 64.34
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.09e4
  • 1.09e4
  • 1.10e4
  • 1.14e4
  • 1.16e4
  • 1.17e4
  • 1.20e4
  • 1.49e4
  • 1.52e4
  • 1.54e4
  • 1.60e4
  • 1.62e4
63.54
  • 63.54
  • 63.04
  • 61.92
  • 61.09
  • 60.79
  • 59.96
  • 50.22
  • 49.22
  • 48.28
  • 46.32
  • 45.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
1.09e4
  • 1.09e4
  • 1.49e4
  • 1.78e4
63.40
  • 63.40
  • 50.00
  • 40.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.11e4
  • 1.11e4
  • 1.36e4
  • 1.81e4
62.77
  • 62.77
  • 54.62
  • 39.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
1.15e4
  • 1.15e4
61.53
  • 61.53
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.92
  • 60.92
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.17e4
  • 1.17e4
60.66
  • 60.66
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
1.21e4
  • 1.21e4
  • 1.49e4
59.50
  • 59.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
57.98
  • 57.98
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.75
  • 53.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.61
  • 49.61
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.67
  • 47.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.22
  • 44.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000059333 (si:ch211-285f17.1)
ZFINZDB-GENE-000607-77 (si:ch211-285f17.1)
EMBLBX296559, BX470247
Uniprot/SPTREMBLE7FAE9, E7FAE9_DANRE, E9QBU8, E9QBU8_DANRE, E9QFC7, E9QFC7_DANRE

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