D. rerio Gene: sbf2 - ENSDARG00000059460 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059460
Namesbf2
DescriptionSET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
OrganismDanio rerio (zebrafish)
Synonym(s)cmt4b2
Orthologs(s)25 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.54
  • 86.54
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.67e3
  • 4.67e3
84.35
  • 84.35
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.23
  • 81.23
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.95e3
  • 5.95e3
  • 6.95e3
80.09
  • 80.09
  • 76.74
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
6.03e3
  • 6.03e3
  • 9.64e3
  • 1.03e4
  • 1.06e4
  • 1.06e4
  • 1.11e4
  • 1.15e4
  • 1.17e4
  • 1.18e4
  • 1.18e4
  • 1.19e4
  • 1.20e4
  • 1.26e4
  • 1.29e4
79.83
  • 79.83
  • 67.73
  • 65.66
  • 64.67
  • 64.62
  • 62.86
  • 61.41
  • 60.74
  • 60.59
  • 60.34
  • 60.22
  • 59.66
  • 57.73
  • 56.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
  • 6.71e3
  • 7.33e3
  • 7.55e3
79.57
  • 79.57
  • 77.52
  • 75.47
  • 74.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.29e3
  • 6.29e3
  • 6.48e3
78.94
  • 78.94
  • 78.30
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
7.12e3
  • 7.12e3
  • 9.05e3
  • 1.12e4
  • 1.23e4
  • 1.28e4
  • 1.29e4
  • 1.30e4
  • 1.51e4
  • 1.53e4
  • 1.61e4
76.15
  • 76.15
  • 69.68
  • 62.42
  • 58.74
  • 57.28
  • 56.91
  • 56.47
  • 49.37
  • 48.73
  • 45.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
7.61e3
  • 7.61e3
  • 1.24e4
  • 1.25e4
  • 1.36e4
  • 1.59e4
74.51
  • 74.51
  • 58.42
  • 58.29
  • 54.33
  • 46.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.37e3
  • 8.37e3
71.96
  • 71.96
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.83e3
  • 8.83e3
70.44
  • 70.44
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.85e3
  • 8.85e3
70.38
  • 70.38
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.03e3
  • 9.03e3
69.76
  • 69.76
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.11e3
  • 9.11e3
  • 1.28e4
69.50
  • 69.50
  • 57.30
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.75
  • 67.75
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.68e3
  • 9.68e3
67.60
  • 67.60
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.89e3
  • 9.89e3
66.87
  • 66.87
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.03e4
  • 1.03e4
  • 1.11e4
  • 1.51e4
  • 1.52e4
  • 1.75e4
65.53
  • 65.53
  • 62.99
  • 49.58
  • 49.19
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.51
  • 65.51
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.44
  • 65.44
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
  • 1.19e4
  • 1.20e4
65.19
  • 65.19
  • 60.16
  • 59.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.06
  • 65.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.87
  • 63.87
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.09e4
  • 1.09e4
63.44
  • 63.44
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.92
  • 62.92
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.11
  • 62.11
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.81
  • 59.81
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.21e4
  • 1.21e4
59.42
  • 59.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.42
  • 59.42
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.77
  • 56.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000059460.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000059460.

Cross-references

EnsemblENSDARG00000059460 (sbf2)
ZFINZDB-GENE-030911-10 (sbf2)
EMBLAL935123, AL935125, CR848679, CU570879, CU571259
Uniprot/SPTREMBLE7F4G2, E7F4G2_DANRE

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