Gene: arl16 - ENSDARG00000059498 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000059498
Name	arl16
Description	ADP-ribosylation factor-like 16 [Source:ZFIN;Acc:ZDB-GENE-070410-114]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:162935
Orthologs(s)	14 orthologs
Paralog(s)	31 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	4.18e3 4.18e3 1.35e4	86.00 86.00 54.92	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	4.41e3 4.41e3	85.24 85.24	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	5.34e3 5.34e3	82.11 82.11	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	5.64e3 5.64e3	81.13 81.13	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage	5.84e3 5.84e3 9.03e3 9.79e3 9.86e3 1.21e4	80.44 80.44 69.78 67.23 67.00 59.46	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	6.76e3 6.76e3 9.43e3	77.36 77.36 68.42	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	7.58e3 7.58e3 8.74e3	74.62 74.62 70.74	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000104life cycle	7.90e3 7.90e3 1.50e4	73.54 73.54 49.92	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.01e4 1.01e4	66.12 66.12	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	1.26e4 1.26e4 1.38e4	57.73 57.73 53.68	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.27e4 1.27e4	57.58 57.58	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.30e4 1.30e4	56.59 56.59	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.31e4 1.31e4	56.02 56.02	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.33e4 1.33e4	55.63 55.63	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.34e4 1.34e4	55.16 55.16	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.37e4 1.37e4	54.04 54.04	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.38e4 1.38e4	53.63 53.63	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.39e4 1.39e4	53.55 53.55	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.42e4 1.42e4	52.34 52.34	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.43e4 1.43e4 1.54e4	52.15 52.15 48.53	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.43e4 1.43e4	52.03 52.03	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.45e4 1.45e4	51.58 51.58	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.84 49.84	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.59e4 1.59e4	46.72 46.72	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.65e4 1.65e4	44.81 44.81	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	14 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	14 genes ENSG00000214087 ARL16 ENSMUSG00000057594 Arl16 ENSPTRG00000030016 ARL16 ENSGGOG00000009339 ARL16 ENSRNOG00000049235 Arl16 ENSBTAG00000030200 ARL16 ENSECAG00000026875 ARL16 ENSCAFG00000024784 ARL16 ENSFCAG00000018816 ARL16 ENSCPOG00000020035 ARL16 ENSMODG00000002754 ARL16 ENSGALG00000007198 ARL16 ENSACAG00000016807 ARL16 ENSXETG00000025485 arl16	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000059498.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Eukaryota	31 genes ENSDARG00000006915 arl8ba ENSDARG00000009484 arf1 ENSDARG00000014763 arf2a ENSDARG00000015404 arl3l2 ENSDARG00000016393 arf2b ENSDARG00000018627 arl5a ENSDARG00000032056 arl6 ENSDARG00000033320 sar1ab ENSDARG00000035719 arl5c ENSDARG00000036637 arl11 ENSDARG00000036998 arf3b ENSDARG00000045989 arf4a ENSDARG00000052928 arf6b ENSDARG00000056794 ARL3 (1 to many) ENSDARG00000057857 arfrp1 ENSDARG00000063223 arl14 ENSDARG00000069496 arl2 ENSDARG00000070318 arl8bb ENSDARG00000070472 ARF5 ENSDARG00000070539 arf3a ENSDARG00000071409 arl3 ENSDARG00000073876 si:ch1073-165f9.2 ENSDARG00000074210 zgc:110286 ENSDARG00000078686 arl8a ENSDARG00000094709 arl8 ENSDARG00000100339 arf4b ENSDARG00000101626 arf6a ENSDARG00000101680 arl1 ENSDARG00000102393 arl3l1 ENSDARG00000103403 sar1b ENSDARG00000103858 arf4a	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000059498.

Cross-references

Ensembl	ENSDARG00000059498 (arl16)
ZFIN	ZDB-GENE-070410-114 (arl16)
EMBL	BX682552
Uniprot/SPTREMBL	F1QAH7, F1QAH7_DANRE