D. rerio Gene: agmat - ENSDARG00000059700 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059700
Nameagmat
Descriptionagmatine ureohydrolase (agmatinase) [Source:ZFIN;Acc:ZDB-GENE-060929-696]
OrganismDanio rerio (zebrafish)
Synonym(s)auh, zgc:153353
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
901
  • 901
96.99
  • 96.99
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.08
  • 91.08
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.01
  • 90.01
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.93
  • 86.93
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.16e3
  • 4.16e3
86.06
  • 86.06
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.42e3
  • 5.42e3
81.86
  • 81.86
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
76.29
  • 76.29
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
7.82e3
  • 7.82e3
  • 1.43e4
73.80
  • 73.80
  • 52.24
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.49e3
  • 8.49e3
  • 1.08e4
71.59
  • 71.59
  • 63.94
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.71e3
  • 8.71e3
  • 1.85e4
70.84
  • 70.84
  • 38.19
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.41e3
  • 9.41e3
68.48
  • 68.48
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.79
  • 64.79
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.06e4
  • 1.06e4
  • 1.65e4
64.56
  • 64.56
  • 44.85
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.17
  • 63.17
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.88e4
  • 1.90e4
  • 1.94e4
  • 1.98e4
62.35
  • 62.35
  • 36.96
  • 36.49
  • 35.08
  • 33.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.68
  • 58.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.36
  • 58.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.45e4
  • 1.45e4
  • 1.94e4
51.30
  • 51.30
  • 35.19
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.58e4
49.92
  • 49.92
  • 47.21
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.87
  • 47.87
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.07
  • 44.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000059700 (agmat)
ZFINZDB-GENE-060929-696 (agmat)
EMBLAL954146
Uniprot/SPTREMBLF1QJZ3, F1QJZ3_DANRE

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