D. rerio Gene: cpt1aa - ENSDARG00000059770 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059770
Namecpt1aa
Descriptioncarnitine palmitoyltransferase 1Aa (liver) [Source:ZFIN;Acc:ZDB-GENE-060503-925]
OrganismDanio rerio (zebrafish)
Synonym(s)cpt1a, si:dkey-56p7.8
Orthologs(s)7 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.10e3
  • 3.10e3
  • 8.35e3
89.61
  • 89.61
  • 72.04
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.69
  • 88.69
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.85e3
  • 4.85e3
83.76
  • 83.76
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
83.43
  • 83.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
83.26
  • 83.26
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.10e3
  • 5.10e3
82.93
  • 82.93
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.56e3
  • 5.56e3
  • 6.76e3
81.40
  • 81.40
  • 77.35
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
5.61e3
  • 5.61e3
  • 6.04e3
  • 6.04e3
  • 6.38e3
  • 7.88e3
  • 9.08e3
  • 9.73e3
  • 9.81e3
  • 9.93e3
  • 1.01e4
81.20
  • 81.20
  • 79.79
  • 79.77
  • 78.65
  • 73.61
  • 69.61
  • 67.42
  • 67.15
  • 66.75
  • 66.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.67e3
  • 5.67e3
81.02
  • 81.02
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.27
  • 80.27
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.03e3
  • 6.03e3
79.80
  • 79.80
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.20
  • 79.20
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.19
  • 79.19
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.26e3
  • 6.26e3
79.04
  • 79.04
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.51e3
  • 6.51e3
78.22
  • 78.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
77.81
  • 77.81
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
6.75e3
  • 6.75e3
  • 8.04e3
  • 8.11e3
  • 8.88e3
  • 1.05e4
  • 1.25e4
77.41
  • 77.41
  • 73.08
  • 72.84
  • 70.28
  • 64.81
  • 58.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.99e3
  • 6.99e3
76.60
  • 76.60
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.05e3
  • 7.05e3
  • 7.55e3
  • 7.65e3
  • 9.73e3
76.40
  • 76.40
  • 74.72
  • 74.39
  • 67.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.18e3
  • 7.18e3
  • 8.34e3
75.97
  • 75.97
  • 72.06
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.26e3
  • 7.26e3
  • 7.53e3
  • 8.22e3
75.70
  • 75.70
  • 74.78
  • 72.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • UBERON:0000104life cycle
7.60e3
  • 7.60e3
  • 8.11e3
  • 8.37e3
  • 8.38e3
  • 8.48e3
  • 8.74e3
  • 8.86e3
  • 8.93e3
  • 8.98e3
  • 9.06e3
  • 9.13e3
  • 9.82e3
  • 1.00e4
  • 1.41e4
  • 1.50e4
74.56
  • 74.56
  • 72.86
  • 71.97
  • 71.93
  • 71.62
  • 70.72
  • 70.35
  • 70.09
  • 69.94
  • 69.67
  • 69.44
  • 67.11
  • 66.53
  • 52.66
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.65e3
  • 7.65e3
  • 7.76e3
74.38
  • 74.38
  • 74.02
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.68e3
  • 7.68e3
74.29
  • 74.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.45e3
  • 9.45e3
68.35
  • 68.35
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.49e3
  • 9.49e3
68.21
  • 68.21
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.31
  • 66.31
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.71
  • 63.71
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.28
  • 60.28
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.20e4
  • 1.20e4
  • 1.29e4
  • 1.35e4
59.96
  • 59.96
  • 56.77
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.33e4
  • 1.33e4
55.33
  • 55.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species7 genesCompare expression

Orthology information comes from OMA : ENSDARG00000059770.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Bilateria4 genesCompare expression
Opisthokonta10 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000059770.

Cross-references

EnsemblENSDARG00000059770 (cpt1aa)
ZFINZDB-GENE-060503-925 (cpt1aa)
EMBLAL929208
Uniprot/SPTREMBLF1Q5A5, F1Q5A5_DANRE, Q1MTA9, Q1MTA9_DANRE

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