D. rerio Gene: pdzd2 - ENSDARG00000059801 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059801
Namepdzd2
DescriptionPDZ domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060526-297]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-3h3.1
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
4.20e3
  • 4.20e3
85.95
  • 85.95
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
78.70
  • 78.70
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.11e3
  • 8.11e3
72.84
  • 72.84
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.86e3
  • 9.86e3
66.98
  • 66.98
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.00e4
  • 1.00e4
  • 1.11e4
  • 1.23e4
  • 1.27e4
  • 1.27e4
66.47
  • 66.47
  • 62.93
  • 58.82
  • 57.55
  • 57.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.03e4
  • 1.03e4
  • 1.08e4
65.68
  • 65.68
  • 63.68
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.80
  • 63.80
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
  • 1.38e4
61.56
  • 61.56
  • 53.86
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.30
  • 61.30
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.12
  • 61.12
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
  • 1.20e4
61.06
  • 61.06
  • 59.89
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.24e4
  • 1.24e4
  • 1.25e4
58.49
  • 58.49
  • 58.17
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.33e4
  • 1.33e4
55.32
  • 55.32
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.02
  • 52.02
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.52e4
  • 1.52e4
  • 1.66e4
49.08
  • 49.08
  • 44.39
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
48.97
  • 48.97
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.16
  • 48.16
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.37
  • 47.37
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.54
  • 46.54
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.07
  • 46.07
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.10
  • 43.10
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.07
  • 39.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

Do not show this banner again